ArticleBioinformatics (Oxford, England)2009
FrameDP: sensitive peptide detection on noisy matured sequences.
Article in Bioinformatics (Oxford, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.
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Who cites it
63 citing papers in PubMed.
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- A high diversity of non-target site resistance mechanisms to acetolactate-synthase (ALS) inhibiting herbicides has evolved within and among field populations of common ragweed (Ambrosia artemisiifolia L.).BMC plant biology · 2023Article
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- Evolution of mammalian longevity: age-related increase in autophagy in bats compared to other mammals.Aging · 2021Article
- Deciphering the molecular mechanisms of mother-to-egg immune protection in the mealworm beetle Tenebrio molitor.PLoS pathogens · 2020Article
- Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds.Proceedings of the National Academy of Sciences of the United States of America · 2020Article
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- Search for potential reading frameshifts in cds from Arabidopsis thaliana and other genomes.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019Article
- Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Data in brief · 2019Article
- Plant genome and transcriptome annotations: from misconceptions to simple solutions.Briefings in bioinformatics · 2018Article
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- Disentangling the Causes for Faster-X Evolution in Aphids.Genome biology and evolution · 2018Article
- ExUTR: a novel pipeline for large-scale prediction of 3'-UTR sequences from NGS data.BMC genomics · 2017Article
- AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation inThe Plant cell · 2017Article
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- Bursaphelenchus xylophilus and B. mucronatus secretomes: a comparative proteomic analysis.Scientific reports · 2016Article
- Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis.BMC genomics · 2016Article
3 more citing papers are in PubMed but not listed here.
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Authors and funding
3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
summaryTranscriptome sequencing represents a fundamental source of information for genome-wide studies and transcriptome analysis and will become increasingly important for expression analysis as new sequencing technologies takes over array technology. The identification of the protein-coding region in transcript sequences is a prerequisite for systematic amino acid-level analysis and more specifically for domain identification. In this article, we present FrameDP, a self-training integrative pipeline for predicting CDS in transcripts which can adapt itself to different levels of sequence qualities. AVAILABILITY: FrameDP for Linux (web-server and underlying pipeline) is available at {{http://iant.toulouse.inra.fr/FrameDP}} for direct use or a standalone installation.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.