Evidence map›Paper›PMID 19152328›Full record

ArticleBiochemistry2009

Cross-linking of a DOPA-containing peptide ligand into its G protein-coupled receptor.

George K E Umanah, Cagdas Son, FaXiang Ding, Fred Naider, Jeffrey M Becker

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Capturing Peptide-GPCR Interactions and Their Dynamics.Molecules (Basel, Switzerland) · 2020
    Review
  3. A Paradigm for Peptide Hormone-GPCR Analyses.Molecules (Basel, Switzerland) · 2020
    Review
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

George K E UmanahDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee 37996, USA.
Cagdas Son
FaXiang Ding
Fred Naider
Jeffrey M Becker
College of Staten Island · USThe Graduate Center, CUNY · USCity University of New York · US

Funding

PEPTIDE/CELL INTERACTIONS IN SACCHAROMYCES CEREVISIAER01GM022087 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BECKER, JEFFREY M., NAIDER, FRED R · 1985 to 2011
$4.9M
PEPTIDE-CELL INTERACTIONS IN SACCHAROMYCES CEREVISIAER01GM022086 · NIGMS · COLLEGE OF STATEN ISLD ST. GEORGE CAMPUS · PI NAIDER, FRED R · 1985 to 2006
$2.5M
Peptide-Cell Interactions in Saccharomyces cerevisiaeR56GM022086 · NIGMS · COLLEGE OF STATEN ISLAND · PI NAIDER, FRED R · 2007 to 2007
$371k
Peptide-Cell Interactions in Saccharomyces cerevisiaeR56GM022087 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BECKER, JEFFREY M. · 2007 to 2007
$294k
NIGMS NIH HHS GM-22086NIGMS NIH HHS GM-22087NIGMS NIH HHS R01 GM022086NIGMS NIH HHS R01 GM022087NIGMS NIH HHS R56 GM022086NIGMS NIH HHS R56 GM022087
6 · The paper itself

Abstract

The interaction between a 3,4-dihydroxyphenylalanine (DOPA) labeled analogue of the tridecapeptide alpha-factor (W-H-W-L-Q-L-K-P-G-Q-P-M-Y) and Ste2p, a Saccharomyces cerevisiae model G protein-coupled receptor (GPCR), has been analyzed by periodate-mediated cross-linking. Chemically synthesized alpha-factor with DOPA substituting for tyrosine at position 13 and biotin tagged onto lysine(7)([Lys(7)(BioACA),Nle(12),DOPA(13)]alpha-factor; Bio-DOPA-alpha-factor) was used for cross-linking into Ste2p. The biological activity of Bio-DOPA-alpha-factor was about one-third that of native alpha-factor as determined by growth arrest assay and exhibited about a 10-fold lower binding affinity to Ste2p. Bio-DOPA-alpha-factor cross-linked into Ste2p as demonstrated by Western blot analysis using a neutravidin-HRP conjugate to detect Bio-DOPA-alpha-factor. Cross-linking was inhibited by excess native alpha-factor and an alpha-factor antagonist. The Ste2p-ligand complex was purified using a metal ion affinity column, and after cyanogen bromide treatment, avidin affinity purification was used to capture Bio-DOPA-alpha-factor-Ste2p cross-linked peptides. MALDI-TOF spectrometric analyses of the cross-linked fragments showed that Bio-DOPA-alpha-factor reacted with the Phe(55)-Met(69) region of Ste2p. Cross-linking of Bio-DOPA-alpha-factor was reduced by 80% using a cysteine-less Ste2p (Cys59Ser). These results suggest an interaction between position 13 of alpha-factor and residue Cys(59) of Ste2p. This study is the first to report DOPA cross-linking of a peptide hormone to a GPCR and the first to identify a residue-to-residue cross-link between Ste2p and alpha-factor, thereby defining a specific contact point between the bound ligand and its receptor.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionArginineBinding SitesCell MembraneCross-Linking ReagentsCysteineDihydroxyphenylalanineImmunoblottingLigandsModels, MolecularOligopeptidesProtein BindingProtein Structure, TertiaryReceptors, G-Protein-CoupledReceptors, Mating FactorArginineCross-Linking ReagentsCysteineDihydroxyphenylalanineLigandsOligopeptidesReceptors, G-Protein-CoupledReceptors, Mating FactorSaccharomyces cerevisiae ProteinsSTE2 protein, S cerevisiaeTyrosine

Identifiers

PMID19152328
PMCPMC2693260
OpenAlexW2002332956

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.