Evidence map›Paper›PMID 19151093›Full record

ReviewBriefings in functional genomics & proteomics2009

18O stable isotope labeling in MS-based proteomics.

Xiaoying Ye, Brian Luke, Thorkell Andresson, Josip Blonder

Open access · bronzeAbstract readReview
In one paragraph

Review in Briefings in functional genomics & proteomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 121 citations in OpenAlex.

  1. Review
  2. Targeted Metabolomic Methods forJournal of proteome research · 2025
    Article
  3. Isotope Labeling Techniques for Virus-Infected Cells.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  4. Review
  5. Article
  6. Simple In VitroInternational journal of molecular sciences · 2023
    Article
  7. Review
  8. Analysis ofInternational journal of molecular sciences · 2022
    Article
  9. Polyphosphate Dynamics in Cable Bacteria.Frontiers in microbiology · 2022
    Article
  10. Quantitative Proteomics Using Isobaric Labeling: A Practical Guide.Genomics, proteomics & bioinformatics · 2021
    Review
  11. Article
  12. Article
  13. International journal of particle therapy · 2021
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. FEBS open bio · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Xiaoying YeLaboratory of Proteomics and Analytical Technologies, Advanced Technology Program, SAIC-Frederick Inc, NCI at Frederick, Frederick, MD 21702-1201, USA.
Brian Luke
Thorkell Andresson
Josip Blonder
Science Applications International Corporation (United States) · US

Funding

NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

A variety of stable isotope labeling techniques have been developed and used in mass spectrometry (MS)-based proteomics, primarily for relative quantitation of changes in protein abundances between two compared samples, but also for qualitative characterization of differentially labeled proteomes. Differential (16)O/(18)O coding relies on the (18)O exchange that takes place at the C-terminal carboxyl group of proteolytic fragments, where two (16)O atoms are typically replaced by two (18)O atoms by enzyme-catalyzed oxygen-exchange in the presence of H(2)(18)O. The resulting mass shift between differentially labeled peptide ions permits identification, characterization and quantitation of proteins from which the peptides are proteolytically generated. This review focuses on the utility of (16)O/(18)O labeling within the context of mass spectrometry-based proteome research. Different strategies employing (16)O/(18)O are examined in the context of global comparative proteome profiling, targeted subcellular proteomics, analysis of post-translational modifications and biomarker discovery. Also discussed are analytical issues related to this technique, including variable (18)O exchange along with advantages and disadvantages of (16)O/(18)O labeling in comparison with other isotope-coding techniques.

Indexed as

AnimalsBiomarkersChromatography, LiquidHumansIsotope LabelingMass SpectrometryMembrane ProteinsOxygenOxygen IsotopesProtein Processing, Post-TranslationalProteinsProteomeProteomicsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBiomarkersMembrane ProteinsOxygenOxygen IsotopesProteinsProteome

Identifiers

PMID19151093
PMCPMC2722262
OpenAlexW2147570609

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.