ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2009
Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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Who cites it
46 citing papers in PubMed, 91 citations in OpenAlex.
- Genetic resources and pangenome analysis of barley.Breeding science · 2025Article
- Regulation of Seed Dormancy Genes in Triticeae Species.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Chromosome-scale assembly of barley cv. 'Haruna Nijo' as a resource for barley genetics.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
- Repression of Mitochondrial Citrate Synthase Genes by Aluminum Stress in Roots ofFrontiers in plant science · 2022Article
- History and future perspectives of barley genomics.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020Review
- A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise.G3 (Bethesda, Md.) · 2020Article
- The draft genome of a wild barley genotype reveals its enrichment in genes related to biotic and abiotic stresses compared to cultivated barley.Plant biotechnology journal · 2020Article
- Chloroplast Outer Membrane β-Barrel Proteins Use Components of the General Import Apparatus.The Plant cell · 2019Article
- Gene Expression Profiling and Fine Mapping Identifies a Gibberellin 2-Oxidase Gene Co-segregating With the Dominant Dwarfing GeneFrontiers in plant science · 2019Article
- Development of Genome-Wide SNP Markers for Barley via Reference- Based RNA-Seq Analysis.Frontiers in plant science · 2019Article
- Reduced nitric oxide levels during drought stress promote drought tolerance in barley and is associated with elevated polyamine biosynthesis.Scientific reports · 2017Article
- Exome QTL-seq maps monogenic locus and QTLs in barley.BMC genomics · 2017Article
- Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare).BMC genomics · 2016Article
- Alanine aminotransferase controls seed dormancy in barley.Nature communications · 2016Article
- Improvement of barley genome annotations by deciphering the Haruna Nijo genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- Gene Overexpression Resources in Cereals for Functional Genomics and Discovery of Useful Genes.Frontiers in plant science · 2016Review
- MOROKOSHI: transcriptome database in Sorghum bicolor.Plant & cell physiology · 2015Article
- Phylogenetic analysis of barley WRKY proteins and characterization of HvWRKY1 and -2 as repressors of the pathogen-inducible gene HvGER4c.Molecular genetics and genomics : MGG · 2014Article
- Transcriptome sequencing of two wild barley (Hordeum spontaneum L.) ecotypes differentially adapted to drought stress reveals ecotype-specific transcripts.BMC genomics · 2014Article
- The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression.The Plant journal : for cell and molecular biology · 2014Article
Corrections and comments
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Authors and funding
9 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A collection of 5006 full-length (FL) cDNA sequences was developed in barley. Fifteen mRNA samples from various organs and treatments were pooled to develop a cDNA library using the CAP trapper method. More than 60% of the clones were confirmed to have complete coding sequences, based on comparison with rice amino acid and UniProt sequences. Blastn homologies (E<1E-5) to rice genes and Arabidopsis genes were 89 and 47%, respectively. Of the 5028 possible amino acid sequences derived from the 5006 FLcDNAs, 4032 (80.2%) were classified into 1678 GreenPhyl multigenic families. There were 555 cDNAs showing low homology to both rice and Arabidopsis. Gene ontology annotation by InterProScan indicated that many of these cDNAs (71%) have no known molecular functions and may be unique to barley. The cDNAs showed high homology to Barley 1 GeneChip oligo probes (81%) and the wheat gene index (84%). The high homology between FLcDNAs (27%) and mapped barley expressed sequence tag enabled assigning linkage map positions to 151-233 FLcDNAs on each of the seven barley chromosomes. These comprehensive barley FLcDNAs provide strong platform to connect pre-existing genomic and genetic resources and accelerate gene identification and genome analysis in barley and related species. Sequence data from this article have been deposited with the DDBJ/EMBL/GenBank Data Libraries under accession nos AK248134-AK253139. The online database with annotation is available at http://www.shigen.nig.ac.jp/barley/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.