Evidence map›Paper›PMID 19149894›Full record

ArticleBMC evolutionary biology2009

Molecular evolution in Panagrolaimus nematodes: origins of parthenogenesis, hermaphroditism and the Antarctic species P. davidi.

Samantha C Lewis, Leslie A Dyal, Caroline F Hilburn, Stephanie Weitz, Wei-Siang Liau, Craig W Lamunyon, Dee R Denver

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  5. Description ofJournal of nematology · 2024
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  12. A pan-metazoan concept for adult stem cells: the wobbling Penrose landscape.Biological reviews of the Cambridge Philosophical Society · 2022
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  13. Review
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  15. Article
  16. A draft genome for a species ofJournal of nematology · 2019
    Article
  17. Article
  18. Cold tolerance of the Antarctic nematodes Plectus murrayi and Scottnema lindsayae.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2015
    Article
  19. Article
  20. Ionic regulation in the Antarctic nematode Panagrolaimus davidi, measured using electron probe X-ray microanalysis.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Samantha C LewisDepartment of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA. samantha.lewis@usermail.com
Leslie A Dyal
Caroline F Hilburn
Stephanie Weitz
Wei-Siang Liau
Craig W Lamunyon
Dee R Denver
Biocom · USCalifornia State Polytechnic University · USOregon State University · US

Funding

The Response of Choline and Folate Status to Controlled Levels of Choline IntakeS06GM053933 · NIGMS · CALIFORNIA STATE POLY U POMONA · PI CAUDILL, MARIE A · 1997 to 2007
$15.1M
NIGMS NIH HHS 5 S06 GM053933-10NIGMS NIH HHS S06 GM053933
6 · The paper itself

Abstract

backgroundAs exemplified by the famously successful model organism Caenorhabditis elegans, nematodes offer outstanding animal systems for investigating diverse biological phenomena due to their small genome sizes, short generation times and ease of laboratory maintenance. Nematodes in the genus Panagrolaimus have served in comparative development and anhydrobiosis studies, and the Antarctic species P. davidi offers a powerful paradigm for understanding the biological mechanisms of extreme cold tolerance. Panagrolaimus nematodes are also unique in that examples of gonochoristic, hermaphroditic and parthenogenetic reproductive modes have been reported for members of this genus. The evolutionary origins of these varying reproductive modes and the Antarctic species P. davidi, however, remain enigmatic.

resultsWe collected nuclear ribosomal RNA gene and mitochondrial protein-coding gene sequences from diverse Panagrolaimus species and strains, including newly discovered isolates from Oregon, to investigate phylogenetic relationships in this nematode genus. Nuclear phylogenies showed that the species and strains historically identified as members of Panagrolaimus constitute a paraphyletic group, suggesting that taxonomic revision is required for Panagrolaimus and related nematode lineages. Strain-specific reproductive modes were mapped onto the molecular phylogeny to show a single origin of parthenogenesis from a presumably gonochoristic ancestor. The hermaphroditic strains were all placed outside a major monophyletic clade that contained the majority of other Panagrolaimus nematodes. Phylogenetic analyses of mitochondrial sequences showed that substantial molecular and geographic diversity exists within the clade of parthenogenetic strains. The Antarctic species P. davidi was found to be very closely related to two Panagrolaimus strains from southern California. Phylogenetic and molecular clock analyses suggested that P. davidi and the California strain PS1579 shared a common ancestor in the very recent evolutionary past.

conclusionOur study provides a phylogenetic framework for understanding the evolutionary origins and diversification patterns of varying reproductive modes within Panagrolaimus and important insights into the origin of the Antarctic species P. davidi. Panagrolaimus offers a powerful nematode model for understanding diverse evolutionary phenomena including the evolution of asexuality and the adaptive evolution of extreme cold tolerance.

Indexed as

Evolution, MolecularParthenogenesisAnimalsAntarctic RegionsDisorders of Sex DevelopmentMaleMolecular Sequence DataNematodaPhylogenySpermatozoaUnited States

Identifiers

PMID19149894
PMCPMC2632994
OpenAlexW2073466638

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.