Evidence map›Paper›PMID 19148281›Full record

ArticlePLoS pathogens2009

Genomic analysis reveals a potential role for cell cycle perturbation in HCV-mediated apoptosis of cultured hepatocytes.

Kathie-Anne Walters, Andrew J Syder, Sharon L Lederer, Deborah L Diamond, Bryan Paeper, Charles M Rice, Michael G Katze

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
  2. Direct Visualization of Hepatitis C Virus RNA in Living Cells and Mice.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  3. Review
  4. Article
  5. Signaling Induced by Chronic Viral Hepatitis: Dependence and Consequences.International journal of molecular sciences · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kathie-Anne WaltersDepartment of Microbiology, School of Medicine, University of Washington, Seattle, Washington, United States of America.
Andrew J Syder
Sharon L Lederer
Deborah L Diamond
Bryan Paeper
Charles M Rice
Michael G Katze
University of Washington · USRockefeller University · US

Funding

Viral and Host cDNA Libraries from 1918 Influenza CasesP01AI058113 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GARCIA-SASTRE, ADOLFO · 2004 to 2010
$20.3M
PROTEOMICS COREP30DA015625 · NIDA · UNIVERSITY OF WASHINGTON · PI KATZE, MICHAEL G · 2002 to 2012
$18.9M
INCIDENCE OF HIV INFECTIONS IN A COHORT OF IV DRUG USERSR01DA012568 · NIDA · JOHNS HOPKINS UNIVERSITY · PI MEHTA, SHRUTI H · 1999 to 2017
$15.5M
The Progression of Hepatitis C Among IDUs with HIVR01DA016078 · NIDA · JOHNS HOPKINS UNIVERSITY · PI BALAGOPAL, ASHWIN, THOMAS, DAVID L · 2002 to 2016
$10.9M
NATURAL HISTORY OF HIV INFECTION IN INJECTION DRUG USERSR37DA004334 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D · 1997 to 2006
$9.0M
Translational CoreU19AI040034 · NIAID · STANFORD UNIVERSITY · PI RICE, CHARLES M · 1996 to 2009
$8.1M
Structure and function of the HCV RNA replicaseR01CA057973 · NCI · WASHINGTON UNIVERSITY · PI RICE, CHARLES M · 1992 to 2013
$4.7M
HIV replication and cell injury in cultured hepatocytesU19AI048214 · NIAID · UNIVERSITY OF WASHINGTON · PI FAUSTO, NELSON · 2000 to 2004
$3.9M
Pathogenesis of Hepatocellular CarcinomasR01CA074131 · NCI · UNIVERSITY OF WASHINGTON · PI FAUSTO, NELSON · 1997 to 2010
$3.1M
Macaque Model and Gene Expression Profiling of SARSR01HL080621 · NHLBI · UNIVERSITY OF WASHINGTON · PI KATZE, MICHAEL G · 2006 to 2009
$2.5M
GENE EXPRESSION PROFILING OF AIDS VACCINE STRATEGIESR21AI071892 · NIAID · UNIVERSITY OF WASHINGTON · PI KATZE, MICHAEL G · 2006 to 2007
$491k
Analysis of Hepatitis C Virus Tropism in the LiverF32DK070497 · NIDDK · ROCKEFELLER UNIVERSITY · PI SYDER, ANDREW J · 2005 to 2007
$152k
NCI NIH HHS 5R01CA074131NCI NIH HHS R01 CA057973NCI NIH HHS R01 CA074131NCI NIH HHS R01CA57973NHLBI NIH HHS 5R01HL080621-03NHLBI NIH HHS R01 HL080621NIAID NIH HHS 5P01AI058113-050006NIAID NIH HHS 5R21AI071892-02NIAID NIH HHS 5U19AI48214NIAID NIH HHS R21 AI071892NIAID NIH HHS U19 AI040034NIAID NIH HHS U19AI040034NIAID NIH HHS U19 AI048214NIDA NIH HHS 1P30DA01562501NIDA NIH HHS 1R37DA004334NIDA NIH HHS 5P30DA015625-07NIDA NIH HHS P30 DA015625NIDA NIH HHS R01 DA012568NIDA NIH HHS R01 DA016078NIDA NIH HHS R01DA12568NIDA NIH HHS R01DA16078NIDA NIH HHS R37 DA004334NIDDK NIH HHS DK70497NIDDK NIH HHS F32 DK070497PHS HHS 5R01A1049168
6 · The paper itself

Abstract

The mechanisms of liver injury associated with chronic HCV infection, as well as the individual roles of both viral and host factors, are not clearly defined. However, it is becoming increasingly clear that direct cytopathic effects, in addition to immune-mediated processes, play an important role in liver injury. Gene expression profiling during multiple time-points of acute HCV infection of cultured Huh-7.5 cells was performed to gain insight into the cellular mechanism of HCV-associated cytopathic effect. Maximal induction of cell-death-related genes and appearance of activated caspase-3 in HCV-infected cells coincided with peak viral replication, suggesting a link between viral load and apoptosis. Gene ontology analysis revealed that many of the cell-death genes function to induce apoptosis in response to cell cycle arrest. Labeling of dividing cells in culture followed by flow cytometry also demonstrated the presence of significantly fewer cells in S-phase in HCV-infected relative to mock cultures, suggesting HCV infection is associated with delayed cell cycle progression. Regulation of numerous genes involved in anti-oxidative stress response and TGF-beta1 signaling suggest these as possible causes of delayed cell cycle progression. Significantly, a subset of cell-death genes regulated during in vitro HCV infection was similarly regulated specifically in liver tissue from a cohort of HCV-infected liver transplant patients with rapidly progressive fibrosis. Collectively, these data suggest that HCV mediates direct cytopathic effects through deregulation of the cell cycle and that this process may contribute to liver disease progression. This in vitro system could be utilized to further define the cellular mechanism of this perturbation.

Indexed as

ApoptosisCell CycleCell Line, TumorCells, CulturedCytokinesHepacivirusHepatitis CHepatocytesHumansLiver TransplantationCytokines

Identifiers

PMID19148281
PMCPMC2613535
OpenAlexW2024123648

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.