ArticleBioinformatics (Oxford, England)2009
MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions.
Article in Bioinformatics (Oxford, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
50 citing papers in PubMed, 95 citations in OpenAlex.
- Ageing impacts extracellular matrix turnover and remodelling in the kidney.Matrix biology plus · 2026Article
- HS, an Ancient Molecular Recognition and Information Storage Glycosaminoglycan, Equips HS-Proteoglycans with Diverse Matrix and Cell-Interactive Properties Operative in Tissue Development and Tissue Function in Health and Disease.International journal of molecular sciences · 2023Review
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- Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics.International journal of molecular sciences · 2020Review
- Basement membrane ligands initiate distinct signalling networks to direct cell shape.Matrix biology : journal of the International Society for Matrix Biology · 2020Article
- Proteomics, Glycomics, and Glycoproteomics of Matrisome Molecules.Molecular & cellular proteomics : MCP · 2019Review
- MatrixDB: integration of new data with a focus on glycosaminoglycan interactions.Nucleic acids research · 2019Article
- PIMKL: Pathway-Induced Multiple Kernel Learning.NPJ systems biology and applications · 2019Article
- Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery.Molecules (Basel, Switzerland) · 2018Review
- Article
- Mesoscopic Rigid Body Modelling of the Extracellular Matrix Self-Assembly.Journal of integrative bioinformatics · 2018Article
- A large-scale expression strategy for multimeric extracellular protein complexes using Drosophila S2 cells and its application to the recombinant expression of heterodimeric ligand-binding domains of taste receptor.Protein science : a publication of the Protein Society · 2017Article
- Glycosaminoglycanomics: where we are.Glycoconjugate journal · 2017Review
- The integrin adhesome network at a glance.Journal of cell science · 2016Review
- Identification of the Glycosaminoglycan Binding Site of Interleukin-10 by NMR Spectroscopy.The Journal of biological chemistry · 2016Article
- Modulation of FAK and Src adhesion signaling occurs independently of adhesion complex composition.The Journal of cell biology · 2016Article
- BioGRID: A Resource for Studying Biological Interactions in Yeast.Cold Spring Harbor protocols · 2016Article
- The extracellular matrix: Tools and insights for the "omics" era.Matrix biology : journal of the International Society for Matrix Biology · 2016Review
- Coinheritance of COL4A5 and MYO1E mutations accentuate the severity of kidney disease.Pediatric nephrology (Berlin, Germany) · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
summaryMatrixDB (http://matrixdb.ibcp.fr) is a database reporting mammalian protein-protein and protein-carbohydrate interactions involving extracellular molecules. It takes into account the full interaction repertoire of the extracellular matrix involving full-length molecules, fragments and multimers. The current version of MatrixDB contains 1972 interactions corresponding to 4412 experiments and involving 259 extracellular biomolecules. AVAILABILITY: MatrixDB is freely available at http://matrixdb.ibcp.fr
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.