Evidence map›Paper›PMID 19146705›Full record

ArticleBMC microbiology2009

Gene expression profile and pathogenicity of biofilm-forming Prevotella intermedia strain 17.

Takeshi Yamanaka, Tomoyo Furukawa, Chiho Matsumoto-Mashimo, Kazuyoshi Yamane, Chieko Sugimori, Takayuki Nambu, Naoki Mori, Hiroyuki Nishikawa, Clay B Walker, Kai-Poon Leung and 1 more

Abstract read
In one paragraph

Article in BMC microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. The dental plaque biofilm matrix.Periodontology 2000 · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Dynamic interactions of neutrophils and biofilms.Journal of oral microbiology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Takeshi YamanakaDepartment of Bacteriology, Osaka Dental University, Osaka, Japan. yamanaka@cc.osaka-dent.ac.jp
Tomoyo Furukawa
Chiho Matsumoto-Mashimo
Kazuyoshi Yamane
Chieko Sugimori
Takayuki Nambu
Naoki Mori
Hiroyuki Nishikawa
Clay B Walker
Kai-Poon Leung
Hisanori Fukushima

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPrevotella intermedia (P. intermedia), a gram-negative, black-pigmented anaerobic rod, has been implicated in the development of chronic oral infection. P. intermedia strain 17 was isolated from a chronic periodontitis lesion in our laboratory and described as a viscous material producing strain. The stock cultures of this strain still maintain the ability to produce large amounts of viscous materials in the spent culture media and form biofilm-like structures. Chemical analyses of this viscous material showed that they were mainly composed of neutral sugars with mannose constituting 83% of the polysaccharides. To examine the biological effect of the extracellular viscous materials, we identified and obtained a naturally-occurring variant strain that lacked the ability to produce viscous materials in vitro from our stock culture collections of strain 17, designated as 17-2. We compared these two strains (strains 17 versus 17-2) in terms of their capacities to form biofilms and to induce abscess formation in mice as an indication of their pathogenicity. Further, gene expression profiles between these two strains in planktonic condition and gene expression patterns of strain 17 in solid and liquid cultures were also compared using microarray assays.

resultsStrain 17 induced greater abscess formation in mice as compared to that of the variant. Strain 17, but not 17-2 showed an ability to interfere with the phagocytic activity of human neutrophils. Expression of several genes which including those for heat shock proteins (DnaJ, DnaK, ClpB, GroEL and GroES) were up-regulated two to four-fold with statistical significance in biofilm-forming strain 17 as compared to the variant strain 17-2. Strain 17 in solid culture condition exhibited more than eight-fold up-regulated expression levels of several genes which including those for levanase, extracytoplasmic function-subfamily sigma factor (sigmaE; putative) and polysialic acid transport protein (KpsD), as compared to those of strain 17 in liquid culture media.

conclusionThese results demonstrate that the capacity to form biofilm in P. intermedia contribute to their resistance against host innate defence responses.

Indexed as

BiofilmsGene Expression ProfilingAnimalsBacterial ProteinsBacteroidaceae InfectionsCells, CulturedChronic PeriodontitisCulture MediaGene Expression Regulation, BacterialHumansLeukocytes, MononuclearMaleMiceMice, Inbred BALB COligonucleotide Array Sequence AnalysisPhagocytosisBacterial ProteinsCulture MediaPolysaccharides, Bacterial

Identifiers

PMID19146705
PMCPMC2633007

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.