Evidence map›Paper›PMID 19144990›Full record

ArticleBlood2009

A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster.

Xueqing Zhang, Zheng Lian, Carolyn Padden, Mark B Gerstein, Joel Rozowsky, Michael Snyder, Thomas R Gingeras, Philipp Kapranov, Sherman M Weissman, Peter E Newburger

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 235 papers.

0numbers the graph read from it
0cells of the map it votes in
235citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

235 citing papers in PubMed, 400 citations in OpenAlex.

  1. Expression and prognostic impact of lncRNAs in acute myeloid leukemia.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Regulation of an lncRNAProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review

175 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Xueqing ZhangDepartment of Pediatrics, University of Massachusetts Medical School, Worcester, MA 01655, USA.
Zheng Lian
Carolyn Padden
Mark B Gerstein
Joel Rozowsky
Michael Snyder
Thomas R Gingeras
Philipp Kapranov
Sherman M Weissman
Peter E Newburger
University of Massachusetts Chan Medical School · USInstitute of Molecular Biology and Biophysics · RUYale University · US

Funding

HOX cluster intergenic non-coding RNAs in myeloid differentiation and functionR01DK054369 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI NEWBURGER, PETER E, WEISSMAN, SHERMAN MORTON · 1999 to 2013
$7.2M
Mapping Sites of Transcription and RegulationU01HG003147 · NHGRI · AFFYMETRIX, INC. · PI GINGERAS, THOMAS RAYMOND · 2003 to 2006
$4.1M
NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NHGRI NIH HHS U01 HG003147NHGRI NIH HHS U01-HG003147NIDDK NIH HHS DK54369NIDDK NIH HHS R01 DK054369
6 · The paper itself

Abstract

We have identified an intergenic transcriptional activity that is located between the human HOXA1 and HOXA2 genes, shows myeloid-specific expression, and is up-regulated during granulocytic differentiation. The novel gene, termed HOTAIRM1 (HOX antisense intergenic RNA myeloid 1), is transcribed antisense to the HOXA genes and originates from the same CpG island that embeds the start site of HOXA1. The transcript appears to be a noncoding RNA containing no long open-reading frame; sucrose gradient analysis shows no association with polyribosomal fractions. HOTAIRM1 is the most prominent intergenic transcript expressed and up-regulated during induced granulocytic differentiation of NB4 promyelocytic leukemia and normal human hematopoietic cells; its expression is specific to the myeloid lineage. Its induction during retinoic acid (RA)-driven granulocytic differentiation is through RA receptor and may depend on the expression of myeloid cell development factors targeted by RA signaling. Knockdown of HOTAIRM1 quantitatively blunted RA-induced expression of HOXA1 and HOXA4 during the myeloid differentiation of NB4 cells, and selectively attenuated induction of transcripts for the myeloid differentiation genes CD11b and CD18, but did not noticeably impact the more distal HOXA genes. These findings suggest that HOTAIRM1 plays a role in the myelopoiesis through modulation of gene expression in the HOXA cluster.

Indexed as

DNA, IntergenicCells, CulturedGene Expression ProfilingHeLa CellsHL-60 CellsHomeobox A1 ProteinHomeodomain ProteinsHumansJurkat CellsK562 CellsMicroRNAsMultigene FamilyMyelopoiesisOligonucleotide Array Sequence AnalysisRegulatory Sequences, Ribonucleic AcidRNA, MessengerDNA, IntergenicHomeobox A1 ProteinHomeodomain ProteinsHOXA2 protein, humanHoxA proteinlong non-coding RNA HOTAIRM1, humanMicroRNAsRegulatory Sequences, Ribonucleic AcidRNA, MessengerRNA Polymerase IITranscription Factors

Identifiers

PMID19144990
PMCPMC2656274
OpenAlexW2060289544

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.