Evidence map›Paper›PMID 19141480›Full record

ArticleGenes & development2008

Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes.

Jason Carte, Ruiying Wang, Hong Li, Rebecca M Terns, Michael P Terns

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 317 papers.

0numbers the graph read from it
0cells of the map it votes in
317citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

317 citing papers in PubMed, 560 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Bacterial small regulatory RNAs.Nature reviews. Microbiology · 2026
    Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Archaeal RNA processing and regulation: expanding the functional landscape.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  14. Article
  15. Review
  16. Bio-protocol · 2025
    Article
  17. Article
  18. Cat1 forms filament networks to degrade NADScience (New York, N.Y.) · 2025
    Article
  19. Article
  20. CRISPR-Cas Systems: A Functional Perspective and Innovations.International journal of molecular sciences · 2025
    Review

257 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jason CarteDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Ruiying Wang
Hong Li
Rebecca M Terns
Michael P Terns
University of Georgia · USFlorida State University · US

Funding

Small RNA-based immunity by CRISPR-Cas complexes of Pyrococcus furiosusR01GM054682 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI TERNS, MICHAEL P, TERNS, REBECCA · 1997 to 2015
$4.8M
Structures of RNA Processing and Silencing Enzymes in ProkaryotesR01GM099604 · NIGMS · FLORIDA STATE UNIVERSITY · PI LI, HONG · 2012 to 2023
$3.3M
Structure and Regulation of snoRNP Interaction with rRNAR01GM066958 · NIGMS · FLORIDA STATE UNIVERSITY · PI LI, HONG · 2003 to 2012
$2.4M
NIGMS NIH HHS R01 GM054682NIGMS NIH HHS R01 GM066958NIGMS NIH HHS R01 GM099604NIGMS NIH HHS R01 GM54682NIGMS NIH HHS R01 GM66958
6 · The paper itself

Abstract

An RNA-based gene silencing pathway that protects bacteria and archaea from viruses and other genome invaders is hypothesized to arise from guide RNAs encoded by CRISPR loci and proteins encoded by the cas genes. CRISPR loci contain multiple short invader-derived sequences separated by short repeats. The presence of virus-specific sequences within CRISPR loci of prokaryotic genomes confers resistance against corresponding viruses. The CRISPR loci are transcribed as long RNAs that must be processed to smaller guide RNAs. Here we identified Pyrococcus furiosus Cas6 as a novel endoribonuclease that cleaves CRISPR RNAs within the repeat sequences to release individual invader targeting RNAs. Cas6 interacts with a specific sequence motif in the 5' region of the CRISPR repeat element and cleaves at a defined site within the 3' region of the repeat. The 1.8 angstrom crystal structure of the enzyme reveals two ferredoxin-like folds that are also found in other RNA-binding proteins. The predicted active site of the enzyme is similar to that of tRNA splicing endonucleases, and concordantly, Cas6 activity is metal-independent. cas6 is one of the most widely distributed CRISPR-associated genes. Our findings indicate that Cas6 functions in the generation of CRISPR-derived guide RNAs in numerous bacteria and archaea.

Indexed as

Escherichia coliGenes, BacterialModels, MolecularProkaryotic CellsProtein Structure, TertiaryPyrococcus furiosusRepetitive Sequences, Nucleic AcidRNA, BacterialRNA, Small UntranslatedRNA, BacterialRNA, Small Untranslated

Identifiers

PMID19141480
PMCPMC2607076
OpenAlexW1977531433

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.