Evidence map›Paper›PMID 19141475›Full record

ArticleGenes & development2008

The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation.

Sunnie M Yoh, Joseph S Lucas, Katherine A Jones

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

160 citing papers in PubMed, 239 citations in OpenAlex.

  1. Powassan Virus NS5 Antagonizes TYK2-Mediated Immune Signaling Pathways.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Genetic alterations in SUPT6H are associated with neurodevelopmental disorders.Biochimica et biophysica acta. Molecular basis of disease · 2026
    Article
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100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Sunnie M YohRegulatory Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA.
Joseph S Lucas
Katherine A Jones
Salk Institute for Biological Studies · USUniversity of California, San Diego · US

Funding

CYCLIN T AND HIV1 TAT TRANSACTIVATIONR01AI044615 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 1999 to 2016
$6.9M
Cyclin T and HIV1 Tat TransactivationR56AI044615 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 2009 to 2009
$474k
NIAID NIH HHS AI044615NIAID NIH HHS R01 AI044615NIAID NIH HHS R56 AI044615
6 · The paper itself

Abstract

Many steps in gene expression and mRNA biosynthesis are coupled to transcription elongation and organized through the C-terminal domain (CTD) of the large subunit of RNA polymerase II (RNAPII). We showed recently that Spt6, a transcription elongation factor and histone H3 chaperone, binds to the Ser2P CTD and recruits Iws1 and the REF1/Aly mRNA export adaptor to facilitate mRNA export. Here we show that Iws1 also recruits the HYPB/Setd2 histone methyltransferase to the RNAPII elongation complex and is required for H3K36 trimethylation (H3K36me3) across the transcribed region of the c-Myc, HIV-1, and PABPC1 genes in vivo. Interestingly, knockdown of either Iws1 or HYPB/Setd2 also enhanced H3K27me3 at the 5' end of the PABPC1 gene, and depletion of Iws1, but not HYPB/Setd2, increased histone acetylation across the coding regions at the HIV-1 and PABPC1 genes in vivo. Knockdown of HYPB/Setd2, like Iws1, induced bulk HeLa poly(A)+ mRNAs to accumulate in the nucleus. In vitro, recombinant Spt6 binds selectively to a stretch of uninterrupted consensus repeats located in the N-terminal half of the CTD and recruits Iws1. Thus Iws1 connects two distinct CTD-binding proteins, Spt6 and HYPB/Setd2, in a megacomplex that affects mRNA export as well as the histone modification state of active genes.

Indexed as

Gene Expression RegulationAcetylationAnimalsCell LineCell NucleusGene Knockdown TechniquesHistone-Lysine N-MethyltransferaseHistonesHIV-1HumansJurkat CellsKruppel-Like Transcription FactorsMethylationMicePoly(A)-Binding Protein IProtein BindingHistone-Lysine N-MethyltransferaseHistonesIws1 protein, humanKruppel-Like Transcription FactorsPoly(A)-Binding Protein IProteinsRNA-Binding ProteinsRNA, MessengerRNA Polymerase IISETD2 protein, humanSETD2 protein, mouseSp6 protein, mouseTranscription Factors

Identifiers

PMID19141475
PMCPMC2607075
OpenAlexW2008809596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.