ArticleApplied and environmental microbiology2009
Biogeographic patterns in genomic diversity among a large collection of Vibrio cholerae isolates.
Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
14 citing papers in PubMed, 33 citations in OpenAlex.
- Vibrio cholerae-An emerging pathogen in Austrian bathing waters?Wiener klinische Wochenschrift · 2023Review
- Article
- Microbial biogeography and ecology of the mouth and implications for periodontal diseases.Periodontology 2000 · 2020Review
- Population Genomics ofFrontiers in cellular and infection microbiology · 2018Article
- High genetic diversity of Vibrio cholerae in the European lake Neusiedler See is associated with intensive recombination in the reed habitat and the long-distance transfer of strains.Environmental microbiology · 2017Article
- The biogeography of kin discrimination across microbial neighbourhoods.Molecular ecology · 2016Article
- Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea.Frontiers in microbiology · 2016Article
- Salmonella enterica diversity in central Californian coastal waterways.Applied and environmental microbiology · 2013Article
- Interdisciplinary approaches to understanding disease emergence: the past, present, and future drivers of Nipah virus emergence.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
- Beyond biogeographic patterns: processes shaping the microbial landscape.Nature reviews. Microbiology · 2012Review
- Ecology and genetic structure of a northern temperate Vibrio cholerae population related to toxigenic isolates.Applied and environmental microbiology · 2011Article
- Recombination shapes the structure of an environmental Vibrio cholerae population.Applied and environmental microbiology · 2011Article
- Prominent human health impacts from several marine microbes: history, ecology, and public health implications.International journal of microbiology · 2011Article
- Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Vibrio cholerae strains are capable of inhabiting multiple niches in the aquatic environment and in some cases cause disease in humans. However, the ecology and biodiversity of these bacteria in environmental settings remains poorly understood. We used the genomic fingerprinting technique enterobacterial repetitive intergenic consensus sequence PCR (ERIC-PCR) to profile 835 environmental isolates from waters and sediments obtained at nine sites along the central California coast. We identified 115 ERIC-PCR genotypes from 998 fingerprints, with a reproducibility of 98.5% and a discriminatory power of 0.971. When the temporal dynamics at a subset of sampling sites were explored, several genotypes provided evidence for cosmopolitan or geographically restricted distributions, and other genotypes displayed nonrandom patterns of cooccurrence. Partial Mantel tests confirmed that genotypic similarity of isolates across all sampling events was correlated with environmental similarity (0.04 < or = r < or = 0.05), temporal proximity (r = 0.09), and geographic distance (r = 0.09). A neutral community model for all sampling events explained 61% of the variation in genotype abundance. Cooccurrence indices (C-score, C-board, and Combo) were significantly different than expected by chance, suggesting that the V. cholerae population may have a competitive structure, especially at the regional scale. Even though stochastic processes are undoubtedly important in generating biogeographic patterns in diversity, deterministic factors appear to play a significant, albeit small, role in shaping the V. cholerae population structure in this system.
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