Evidence map›Paper›PMID 19136949›Full record

ArticleNature genetics2009

Genetic variation in PCDH11X is associated with susceptibility to late-onset Alzheimer's disease.

Minerva M Carrasquillo, Fanggeng Zou, V Shane Pankratz, Samantha L Wilcox, Li Ma, Louise P Walker, Samuel G Younkin, Curtis S Younkin, Linda H Younkin, Gina D Bisceglio and 6 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 168 papers, 18 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
168citing papers in PubMed, 18 pooled it
28.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

168 citing papers in PubMed, 18 syntheses or guidelines pooled it, 304 citations in OpenAlex.

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  5. Associations Between Genetic Variants in 19p13 and 19q13 Regions and Susceptibility to Alzheimer Disease: A Meta-Analysis.Medical science monitor : international medical journal of experimental and clinical research · 2016
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108 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Minerva M CarrasquilloDepartment of Neuroscience, Mayo Clinic College of Medicine, Jacksonville, Florida 32224, USA.
Fanggeng Zou
V Shane Pankratz
Samantha L Wilcox
Li Ma
Louise P Walker
Samuel G Younkin
Curtis S Younkin
Linda H Younkin
Gina D Bisceglio
Nilufer Ertekin-Taner
Julia E Crook
Dennis W Dickson
Ronald C Petersen
Neill R Graff-Radford
Steven G Younkin
Jacksonville College · USMayo Clinic in Florida · USMayo Clinic · US

Funding

National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
Vascular Structure and Function in Cognitive AgingP01AG003949 · NIA · YESHIVA UNIVERSITY · PI mindy katz · 1985 to 2026
$73.9M
SUPPLEMENT TO ALZHEIMERS DISEASE PATIENT REGISTRYU01AG006786 · NIA · MAYO CLINIC ROCHESTER · PI GRAFF-RADFORD, JONATHAN, JACK, CLIFFORD R. · 1986 to 2023
$49.6M
THE PGRN/TDP-43 AXIS IN ALZHEIMER?S DISEASE AND NEURODEGENERATIONP50AG016574 · NIA · MAYO CLINIC ROCHESTER · PI BU, GUOJUN · 1999 to 2018
$36.9M
TRANSGENIC MODELING OF TAUOPATHYP01AG017216 · NIA · MAYO CLINIC JACKSONVILLE · PI DICKSON, DENNIS WILLIAM · 1999 to 2011
$12.0M
PREDICTORS OF THE RATE OF COGNITIVE DECLINE IN ELDERLY SUBJECTSP50AG025711 · NIA · UNIVERSITY OF SOUTH FLORIDA · PI POTTER, HUNTINGTON · 2005 to 2010
$8.2M
PLASMA A BETA AS A SURROGATE GENETIC MARKER FOR LOADR01AG018023 · NIA · MAYO CLINIC JACKSONVILLE · PI YOUNKIN, STEVEN G · 2001 to 2012
$3.3M
Mapping Novel Genes for Late-Onset Alzheimer's DiseaseF32AG020903 · NIA · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2002 to 2008
$129k
NIA NIH HHS AG03949NIA NIH HHS AG12716NIA NIH HHS AG25711NIA NIH HHS F32 AG020903NIA NIH HHS P01 AG003949NIA NIH HHS P01 AG017216NIA NIH HHS P50 AG016574NIA NIH HHS P50 AG025711NIA NIH HHS P50 AG16574NIA NIH HHS R01 AG018023NIA NIH HHS R01 AG18023NIA NIH HHS U01 AG006786NIA NIH HHS U01 AG06576NIA NIH HHS U24 AG021886NIA NIH HHS U24 AG21886
6 · The paper itself

Abstract

By analyzing late-onset Alzheimer's disease (LOAD) in a genome-wide association study (313,504 SNPs, three series, 844 cases and 1,255 controls) and evaluating the 25 SNPs with the most significant allelic association in four additional series (1,547 cases and 1,209 controls), we identified a SNP (rs5984894) on Xq21.3 in PCDH11X that is strongly associated with LOAD in individuals of European descent from the United States. Analysis of rs5984894 by multivariable logistic regression adjusted for sex gave global P values of 5.7 x 10(-5) in stage 1, 4.8 x 10(-6) in stage 2 and 3.9 x 10(-12) in the combined data. Odds ratios were 1.75 (95% CI = 1.42-2.16) for female homozygotes (P = 2.0 x 10(-7)) and 1.26 (95% CI = 1.05-1.51) for female heterozygotes (P = 0.01) compared to female noncarriers. For male hemizygotes (P = 0.07) compared to male noncarriers, the odds ratio was 1.18 (95% CI = 0.99-1.41).

Indexed as

Genetic Predisposition to DiseaseGenetic VariationAgedAged, 80 and overAge of OnsetAlzheimer DiseaseCadherinsCase-Control StudiesFemaleGene FrequencyGenome-Wide Association StudyHeterozygoteHumansLinkage DisequilibriumMaleMiddle AgedCadherinsPCDH11X protein, humanProtocadherins

Identifiers

PMID19136949
PMCPMC2873177
OpenAlexW2033552121

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.