Evidence map›Paper›PMID 19136908›Full record

ArticlePancreas2009

Proteomic analyses of pancreatic cyst fluids.

Eileen Ke, Bhavinkumar B Patel, Tiffany Liu, Xin-Ming Li, Oleh Haluszka, John P Hoffman, Hormoz Ehya, Nancy A Young, James C Watson, David S Weinberg and 6 more

Open access · greenAbstract read
In one paragraph

Article in Pancreas, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 82 citations in OpenAlex.

  1. Highly Accurate Identification of Cystic Precursor Lesions of Pancreatic Cancer Through Targeted Mass Spectrometry: A Phase IIc Diagnostic Study.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2018
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  11. Differences inJournal of carcinogenesis & mutagenesis · 2018
    Article
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  13. [Cystic pancreatic tumors: diagnostics and new biomarkers].Der Chirurg; Zeitschrift fur alle Gebiete der operativen Medizen · 2017
    Review
  14. Global Protease Activity Profiling Provides Differential Diagnosis of Pancreatic Cysts.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Article
  15. Review
  16. Systematic Review of Pancreatic Cyst Fluid Biomarkers: The Path Forward.Clinical and translational gastroenterology · 2015
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Eileen KeFrom the Divisions of *Basic Science, daggerMedical Science, and double daggerPopulation Science, Fox Chase Cancer Center, Philadelphia, PA.
Bhavinkumar B Patel
Tiffany Liu
Xin-Ming Li
Oleh Haluszka
John P Hoffman
Hormoz Ehya
Nancy A Young
James C Watson
David S Weinberg
Minhhuyen T Nguyen
Steven J Cohen
Neal J Meropol
Samuel Litwin
Jeffrey L Tokar
Anthony T Yeung
Fox Chase Cancer Center · USUniversity Gastroenterology · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHARNITA M. ZEIGLER-JOHNSON · 1985 to 2026
$138.8M
Proteomic Biomarkers in Pancreatic Cyst FluidsR03CA119242 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI YEUNG, ANTHONY T · 2005 to 2006
$169k
NCI NIH HHS CA119242NCI NIH HHS P30 CA006927NCI NIH HHS P30CA06927NCI NIH HHS R03 CA119242
6 · The paper itself

Abstract

objectivesThere are currently no diagnostic indicators that are consistently reliable, obtainable, and conclusive for diagnosing and risk-stratifying pancreatic cysts. Proteomic analyses were performed to explore pancreatic cyst fluids to yield effective diagnostic biomarkers.

methodsWe have prospectively recruited 20 research participants and prepared their pancreatic cyst fluids specifically for proteomic analyses. Proteomic approaches applied were as follows: (1) matrix-assisted laser-desorption-ionization time-of-flight mass spectrometry peptidomics with LC/MS/MS (HPLC-tandem mass spectrometry) protein identification; (2) 2-dimensional gel electrophoresis; (3) GeLC/MS/MS (tryptic digestion of proteins fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and identified by LC/MS/MS).

resultsSequencing of more than 350 free peptides showed that exopeptidase activities rendered peptidomics of cyst fluids unreliable; protein nicking by proteases in the cyst fluids produced hundreds of protein spots from the major proteins, making 2-dimensional gel proteomics unmanageable; GeLC/MS/MS revealed a panel of potential biomarker proteins that correlated with carcinoembryonic antigen (CEA).

conclusionsTwo homologs of amylase, solubilized molecules of 4 mucins, 4 solubilized CEA-related cell adhesion molecules (CEACAMs), and 4 S100 homologs may be candidate biomarkers to facilitate future pancreatic cyst diagnosis and risk-stratification. This approach required less than 40 microL of cyst fluid per sample, offering the possibility to analyze cysts smaller than 1 cm in diameter.

Indexed as

ProteomicsAdultAgedAged, 80 and overAmylasesCarcinoembryonic AntigenChromatography, LiquidCyst FluidElectrophoresis, Gel, Two-DimensionalElectrophoresis, Polyacrylamide GelFemaleHumansMaleMiddle AgedMucinsPancreatic CystAmylasesCarcinoembryonic AntigenMucins

Identifiers

PMID19136908
PMCPMC2681236
OpenAlexW1983335555

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.