Evidence map›Paper›PMID 19133784›Full record

ArticleJournal of proteome research2009

Prion disease diagnosis by proteomic profiling.

Allen Herbst, Sean McIlwain, Joshua J Schmidt, Judd M Aiken, C David Page, Lingjun Li

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of proteome research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Cyclic voltammetry: a new strategy for the evaluation of oxidative damage to bovine insulin.Protein science : a publication of the Protein Society · 2010
    Article
  5. Application of "omics" to prion biomarker discovery.Journal of biomedicine & biotechnology · 2010
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Allen HerbstDepartment of Comparative Biosciences, University of Wisconsin-Madison, Wisconsin 53705-222, USA.
Sean McIlwain
Joshua J Schmidt
Judd M Aiken
C David Page
Lingjun Li
University of Wisconsin–Madison · US

Funding

Mass Spectrometric Studies of Neuropeptides in FeedingR01DK071801 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI LINGJUN LI · 2006 to 2026
$6.7M
A Proteomic Approach to Biomarker Discovery in Prion DiseaseR21AI072588 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2007 to 2009
$380k
NIAID NIH HHS AI0272588NIAID NIH HHS R21 AI072588NIDDK NIH HHS R01 DK071801
6 · The paper itself

Abstract

Definitive prion disease diagnosis is currently limited to postmortem assay for the presence of the disease-associated proteinase K-resistant prion protein. Using cerebrospinal fluid (CSF) from prion-infected hamsters, matrix-assisted laser desorption/ionization Fourier transform mass spectrometry (MALDI-FTMS), and support vector machines (SVM), we have identified peptide profiles characteristic of disease state. Using 10-fold leave-one-out cross-validation, we report a predictive accuracy of 72% with a true positive rate of 73% and a false positive rate of 27% demonstrating the suitability of using proteomic profiling and CSF for the development of multiple marker diagnostics of prion disease.

Indexed as

Protein Array AnalysisAnimalsBiomarkersCricetinaeHumansPrion DiseasesPrionsReproducibility of ResultsSensitivity and SpecificitySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBiomarkersPrions

Identifiers

PMID19133784
PMCPMC2652651
OpenAlexW2075187485

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.