Evidence map›Paper›PMID 19131338›Full record

ArticleThe Journal of biological chemistry2009

Identification and characterization of a novel nuclear protein complex involved in nuclear hormone receptor-mediated gene regulation.

Shivani Garapaty, Chong-Feng Xu, Patrick Trojer, Muktar A Mahajan, Thomas A Neubert, Herbert H Samuels

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 78 citations in OpenAlex.

  1. Pooled it
  2. Article
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  4. Review
  5. Review
  6. Article
  7. Transcription factors in microcephaly.Frontiers in neuroscience · 2023
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
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  14. Impact of next-generation sequencing (NGS) for primary endocrine resistance in breast cancer patients.International journal of clinical and experimental pathology · 2018
    Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Shivani GarapatyDepartment of Pharmacology, New York University School of Medicine, New York, New York 10016, USA.
Chong-Feng Xu
Patrick Trojer
Muktar A Mahajan
Thomas A Neubert
Herbert H Samuels
New York University · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
METABOLIC EFFECTS OF THYROID HORMONE IN CELL CULTURER01DK016636 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SAMUELS, HERBERT H · 1986 to 2007
$6.0M
Q-TOF Mass SpectrometerS10RR017990 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2003 to 2003
$500k
Metabolic Effects of Thyroid HormoneR56DK016636 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SAMUELS, HERBERT H · 2009 to 2009
$211k
METABOLIC EFFECTS OF THYROID HORMONER37DK016636 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SAMUELS, HERBERT H · 1991 to 1998
–
NCI NIH HHS P30CA016087-239025NCRR NIH HHS 1S10 RR017990-01NIDDK NIH HHS DK16636
6 · The paper itself

Abstract

NRC/NCoA6 plays an important role in mediating the effects of ligand-bound nuclear hormone receptors as well as other transcription factors. NRC interacting factor 1 (NIF-1) was cloned as a novel factor that interacts in vivo with NRC. Although NIF-1 does not directly interact with nuclear hormone receptors, it enhances activation by nuclear hormone receptors presumably through its interaction with NRC. To further understand the cellular and biological function of NIF-1, we identified NIF-1-associated proteins by in-solution proteolysis followed by mass spectrometry. The identified components revealed factors involved in histone methylation and cell cycle control and include Ash2L, RbBP5, WDR5, HCF-1, DBC-1, and EMSY. Although the NIF-1 complex contains Ash2L, RbBP5, and WDR5, suggesting that the complex might methylate histone H3-Lys-4, we found that the complex contains a H3 methyltransferase activity that modifies a residue other than H3-Lys-4. The identified components form at least two distinctly sized NIF-1 complexes. DBC-1 and EMSY were identified as integral components of an NIF-1 complex of approximately 1.5 MDa and were found to play an important role in the regulation of nuclear receptor-mediated transcription. Stimulation of the Sox9 and HoxA1 genes by retinoic acid receptor-alpha was found to require both DBC-1 and EMSY in addition to NIF-1 for maximal transcriptional activation. Interestingly, NRC was not identified as a component of the NIF-1 complex, suggesting that NIF-1 and NRC do not exist as stable in vitro purified complexes, although the separate NIF-1 and NRC complexes appear to functionally interact in the cell.

Indexed as

Adaptor Proteins, Signal TransducingCell CycleDNA-Binding ProteinsGene Expression RegulationHeLa CellsHistone-Lysine N-MethyltransferaseHistonesHomeobox A1 ProteinHomeodomain ProteinsHost Cell Factor C1HumansIntracellular Signaling Peptides and ProteinsMethylationMultiprotein ComplexesNeoplasm ProteinsNuclear ProteinsAdaptor Proteins, Signal TransducingASH2L protein, humanCCAR2 protein, humanDNA-Binding ProteinsEMSY protein, humanHCFC1 protein, humanHistone-Lysine N-MethyltransferaseHistonesHomeobox A1 ProteinHomeodomain ProteinsHost Cell Factor C1Intracellular Signaling Peptides and ProteinsMultiprotein ComplexesNCOA6 protein, humanNeoplasm ProteinsNuclear ProteinsNuclear Receptor CoactivatorsProtein MethyltransferasesRARA protein, humanRBP5 protein, humanReceptors, Retinoic AcidRepressor ProteinsRetinoic Acid Receptor alphaRetinol-Binding Proteins, CellularSOX9 protein, humanSOX9 Transcription FactorTranscription FactorsWDR5 protein, humanZNF335 protein, human

Identifiers

PMID19131338
PMCPMC2658049
OpenAlexW1991293481

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.