Evidence map›Paper›PMID 19131084›Full record

ArticleVirology2009

Translation elongation factor 1A is a component of the tombusvirus replicase complex and affects the stability of the p33 replication co-factor.

Zhenghe Li, Judit Pogany, Tadas Panavas, Kai Xu, Anthony M Esposito, Terri Goss Kinzy, Peter D Nagy

Open access · greenAbstract read
In one paragraph

Article in Virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
23.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 136 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Genome-wide analysis of the soybeanFrontiers in plant science · 2024
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. NbPsbO1 Interacts Specifically with theJournal of virology · 2021
    Article
  16. Contribution of yeast models to virus research.Applied microbiology and biotechnology · 2021
    Review
  17. Article
  18. Functions and Regulation of Translation Elongation Factors.Frontiers in molecular biosciences · 2021
    Review
  19. Article
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zhenghe LiDepartment of Plant Pathology, University of Kentucky, Lexington, 40546, USA.
Judit Pogany
Tadas Panavas
Kai Xu
Anthony M Esposito
Terri Goss Kinzy
Peter D Nagy
University of Kentucky · USRutgers, The State University of New Jersey · US

Funding

Regulators of Translation Elongation Factor eEF1AR01GM057483 · NIGMS · WESTERN MICHIGAN UNIVERSITY · PI KINZY, TERRI GOSS · 1998 to 2017
$5.4M
VIRUS-HOST INTERACTIONS IN EUKARYOTIC CELLST32AI007403 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI BREWER, GARY A. · 1991 to 2014
$1.7M
Roles of host RNA binding proteins in virus replicationR21AI072170 · NIAID · UNIVERSITY OF KENTUCKY · PI NAGY, PETER · 2007 to 2008
$370k
NIAID NIH HHS R21 AI072170NIAID NIH HHS T32 AI007403NIAID NIH HHS T32AI007403NIGMS NIH HHS R01 GM057483NIGMS NIH HHS R01GM57483
6 · The paper itself

Abstract

Host RNA-binding proteins are likely to play multiple, integral roles during replication of plus-strand RNA viruses. To identify host proteins that bind to viral RNAs, we took a global approach based on the yeast proteome microarray, which contains 4080 purified yeast proteins. The biotin-labeled RNA probes included two distantly related RNA viruses, namely Tomato bushy stunt virus (TBSV) and Brome mosaic virus (BMV). Altogether, we have identified 57 yeast proteins that bound to TBSV RNA and/or BMV RNA. Among the identified host proteins, eleven bound to TBSV RNA and seven bound to BMV RNA with high selectivity, whereas the remaining 39 host proteins bound to both viral RNAs. The interaction between the TBSV replicon RNA and five of the identified host proteins was confirmed via gel-mobility shift and co-purification experiments from yeast. Over-expression of the host proteins in yeast, a model host for TBSV, revealed 4 host proteins that enhanced TBSV replication as well as 14 proteins that inhibited replication. Detailed analysis of one of the identified yeast proteins binding to TBSV RNA, namely translation elongation factor eEF1A, revealed that it is present in the highly purified tombusvirus replicase complex. We also demonstrate binding of eEF1A to the p33 replication protein and a known cis-acting element at the 3' end of TBSV RNA. Using a functional mutant of eEF1A, we provide evidence on the involvement of eEF1A in TBSV replication.

Indexed as

3' Untranslated RegionsBromovirusGene ExpressionMutationPeptide Elongation Factor 1RNA-Dependent RNA PolymeraseRNA, ViralSilencer Elements, TranscriptionalTombusvirusUbiquitinationUbiquitin-Protein Ligase ComplexesViral ProteinsVirus ReplicationYeasts3' Untranslated RegionsPeptide Elongation Factor 1RNA-Dependent RNA PolymeraseRNA, ViralUbiquitin-Protein Ligase ComplexesViral Proteins

Identifiers

PMID19131084
PMCPMC2785496
OpenAlexW2072294559

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.