Evidence map›Paper›PMID 19130239›Full record

ArticleBiomedical microdevices2009

Sample preparation module for bacterial lysis and isolation of DNA from human urine.

M Dominika Kulinski, Madhumita Mahalanabis, Sara Gillers, Jane Y Zhang, Satish Singh, Catherine M Klapperich

Abstract read
In one paragraph

Article in Biomedical microdevices, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

M Dominika Kulinski *Department of Mechanical Engineering, Boston University, 44 Cummington St., Boston, MA, USA.
Madhumita Mahalanabis *Department of Biomedical Engineering, Boston University, 44 Cummington St., Boston, MA, USA.
Sara GillersBoston University Medical Center, 720 Harrison Ave., Boston 02118 MA, USA.
Jane Y ZhangDepartment of Biomedical Engineering, Boston University, 44 Cummington St., Boston, MA, USA.
Satish SinghBoston University Medical Center, 720 Harrison Ave., Boston 02118 MA, USA.
Catherine M KlapperichDepartment of Mechanical Engineering, Boston University, 44 Cummington St., Boston, MA, USA.
Boston University · USBoston Medical Center · US

Funding

Disposable Microfluidic Devices for Point of Care DiagnosticsR21AI071261 · NIAID · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KLAPPERICH, CATHERINE M. · 2009 to 2010
$469k
NIAID NIH HHS R21 AI071261
6 · The paper itself

Abstract

Silica impregnated polymer monolithic columns may provide a simple method for lysing and extracting DNA from bacteria inside of microfluidic chips. Here we use Escherichia coli as a test organism for a point of care thermoplastic microfluidic module designed to take in a urine sample, mix it with lysis buffer, and perform a hybrid chemical/mechanical lysis and solid phase extraction of nucleic acids from the sample. To demonstrate proof-of-concept, we doped human hematuric urine samples with E. coli at concentrations ranging from 10(1)-10(5) colony-forming units/mL (CFU/mL) to simulate patient samples. We then performed on-chip lysis and DNA extraction. The bacterial DNA was amplified using real-time PCR demonstrating lysis and isolation down to 10(1) CFU/mL. Results were comparable to a commercial kit at higher concentrations and performed better at recovering DNA at lower concentrations.

Indexed as

BacteriolysisBiological AssayComputer SimulationDisposable EquipmentDNA, BacterialEscherichia coliGreen Fluorescent ProteinsHumansMicrofluidic Analytical TechniquesMicroscopy, Electron, ScanningMiniaturizationPlasmidsPolymerase Chain ReactionReagent Kits, DiagnosticSilicon DioxideUrineDNA, BacterialGreen Fluorescent ProteinsReagent Kits, DiagnosticSilicon Dioxide

Identifiers

PMID19130239
PMCPMC4442481
OpenAlexW2009620064

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.