Evidence map›Paper›PMID 19129200›Full record

ArticleThe Journal of biological chemistry2009

Homology with vesicle fusion mediator syntaxin-1a predicts determinants of epimorphin/syntaxin-2 function in mammary epithelial morphogenesis.

Connie S Chen, Celeste M Nelson, Davitte Khauv, Simone Bennett, Evette S Radisky, Yohei Hirai, Mina J Bissell, Derek C Radisky

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

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  17. Growth of lung cancer cells in three-dimensional microenvironments reveals key features of tumor malignancy.Integrative biology : quantitative biosciences from nano to macro · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Connie S ChenLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Celeste M Nelson
Davitte Khauv
Simone Bennett
Evette S Radisky
Yohei Hirai
Mina J Bissell
Derek C Radisky
Lawrence Berkeley National Laboratory · USMayo Clinic in Florida · USKyoto University · JPPrinceton University · US

Funding

Role of Metalloproteinases in Mammary Gland RemodelingR01CA057621 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WERB, ZENA · 1993 to 2017
$9.0M
Definition of the Microenvironment in Breast CancerR01CA064786 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI BISSELL, MINA · 1995 to 2020
$6.1M
Definition of Microenvironment in Breast CancerR37CA064786 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI BISSELL, MINA · 2009 to 2013
$2.0M
Mechanisms of MMP-Induced Malignancy in Breast CellsR01CA122086 · NCI · MAYO CLINIC JACKSONVILLE · PI RADISKY, DEREK C · 2007 to 2011
$1.4M
In Vitro Synthesis of Fibrosis GenesisR21CA128660 · NCI · PRINCETON UNIVERSITY · PI NELSON, CELESTE M · 2007 to 2008
$339k
NCI NIH HHS CA122086NCI NIH HHS CA128660NCI NIH HHS CA57621NCI NIH HHS CA64786
6 · The paper itself

Abstract

We have shown that branching morphogenesis of mammary ductal structures requires the action of the morphogen epimorphin/syntaxin-2. Epimorphin, originally identified as an extracellular molecule, is identical to syntaxin-2, an intracellular molecule that is a member of the extensively investigated syntaxin family of proteins that mediate vesicle trafficking. We show here that, although epimorphin/syntaxin-2 is highly homologous to syntaxin-1a, only epimorphin/syntaxin-2 can stimulate mammary branching morphogenesis. We construct a homology model of epimorphin/syntaxin-2 based on the published structure of syntaxin-1a, and we use this model to identify the structural motif responsible for the morphogenic activity. We identify four residues located within the cleft between helices B and C that differ between syntaxin-1a and epimorphin/syntaxin-2; through site-directed mutagenesis of these four amino acids, we confer the properties of epimorphin for cell adhesion, gene activation, and branching morphogenesis onto the inactive syntaxin-1a template. These results provide a dramatic demonstration of the use of structural information about one molecule to define a functional motif of a second molecule that is related at the sequence level but highly divergent functionally.

Indexed as

Amino Acid MotifsAmino Acid SubstitutionAnimalsCell AdhesionCell LineFemaleHumansMammary Glands, AnimalMammary Glands, HumanMembrane GlycoproteinsMiceModels, MolecularMorphogenesisMutagenesis, Site-DirectedStructural Homology, ProteinSyntaxin 1Epim protein, mouseMembrane GlycoproteinsSTX2 protein, humanSyntaxin 1

Identifiers

PMID19129200
PMCPMC2652326
OpenAlexW2072046699

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.