Evidence map›Paper›PMID 19129186›Full record

ArticleThe Journal of biological chemistry2009

The secondary multidrug/proton antiporter MdfA tolerates displacements of an essential negatively charged side chain.

Nadejda Sigal, Nir Fluman, Shira Siemion, Eitan Bibi

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Dynamical Behavior of the Human Ferroportin Homologue fromInternational journal of molecular sciences · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The ins and outs of vesicular monoamine transporters.The Journal of general physiology · 2018
    Review
  14. Article
  15. Article
  16. Energy coupling mechanisms of MFS transporters.Protein science : a publication of the Protein Society · 2015
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nadejda SigalDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel.
Nir Fluman
Shira Siemion
Eitan Bibi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The largest family of solute transporters includes ion motive force-driven secondary transporters. Several well characterized solute-specific transport systems in this group have at least one irreplaceable acidic residue that plays a critical role in energy coupling during transport. Previous studies have established the importance of acidic residues in substrate recognition by major facilitator superfamily secondary multidrug transporters, but their role in the transport mechanism remained unknown. We have been investigating the involvement of acidic residues in the mechanism of MdfA, an Escherichia coli secondary multidrug/proton antiporter. We demonstrated that no single negatively charged side chain plays an irreplaceable role in MdfA. Accordingly, we hypothesized that MdfA might be able to utilize at least two acidic residues alternatively. In this study, we present evidence that indeed, unlike solute-specific secondary transporters, MdfA tolerates displacements of an essential negative charge to various locations in the putative drug translocation pathway. The results suggest that MdfA utilizes a proton translocation strategy that is less sensitive to perturbations in the geometry of the proton-binding site, further illustrating the exceptional structural promiscuity of multidrug transporters.

Indexed as

Amino Acids, AcidicAntiportersBinding SitesDrug Resistance, Multiple, BacterialEscherichia coliEscherichia coli ProteinsMembrane Transport ProteinsProtein Structure, TertiaryAmino Acids, AcidicAntiportersEscherichia coli ProteinsMdfa protein, E coliMembrane Transport Proteins

Identifiers

PMID19129186
PMCPMC2652298

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.