Evidence map›Paper›PMID 19129173›Full record

ArticleHuman molecular genetics2009

Incomplete penetrance and phenotypic variability characterize Gdf6-attributable oculo-skeletal phenotypes.

Mika Asai-Coakwell, Curtis R French, Ming Ye, Kamal Garcha, Karin Bigot, Anoja G Perera, Karen Staehling-Hampton, Silvina C Mema, Bhaskar Chanda, Arcady Mushegian and 15 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it, 102 citations in OpenAlex.

  1. Stem cells and discogenic back pain.British medical bulletin · 2023
    Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Heterozygous loss-of-function variants significantly expand the phenotypes associated with loss of GDF11.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  11. Genes · 2021
    Article
  12. Rare heterozygous GDF6 variants in patients with renal anomalies.European journal of human genetics : EJHG · 2020
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Sostdc1 is expressed in all major compartments of developing and adult mammalian eyes.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2019
    Article
  18. Review
  19. Article
  20. Phospholipid membranes drive abdominal aortic aneurysm development through stimulating coagulation factor activity.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 5 countries.

Mika Asai-CoakwellDepartment of Ophthalmology, University of Alberta, Edmonton, Canada.
Curtis R French
Ming Ye
Kamal Garcha
Karin Bigot
Anoja G Perera
Karen Staehling-Hampton
Silvina C Mema
Bhaskar Chanda
Arcady Mushegian
Steven Bamforth
Michael R Doschak
Guang Li
Matthew B Dobbs
Philip F Giampietro
Brian P Brooks
Perumalsamy Vijayalakshmi
Yves Sauvé
Marc Abitbol
Periasamy Sundaresan
Veronica van Heyningen
Olivier Pourquié
T Michael Underhill
Andrew J Waskiewicz
Ordan J Lehmann
University of Alberta · CAStowers Institute for Medical Research · USAravind Eye Hospital · INMinistère de l’Enseignement Supérieur et de la Recherche · FRUniversity of British Columbia · CAMarshfield Clinic · USMRC Human Genetics UnitNational Institutes of Health · USWashington University in St. Louis · US

Funding

The Genetics of Uveal ColobomaZIAEY000469 · NEI · NATIONAL EYE INSTITUTE · PI BROOKS, BRIAN · 2009 to 2025
$35.2M
Medical Research Council MC_U127527199
6 · The paper itself

Abstract

Proteins of the bone morphogenetic protein (BMP) family are known to have a role in ocular and skeletal development; however, because of their widespread expression and functional redundancy, less progress has been made identifying the roles of individual BMPs in human disease. We identified seven heterozygous mutations in growth differentiation factor 6 (GDF6), a member of the BMP family, in patients with both ocular and vertebral anomalies, characterized their effects with a SOX9-reporter assay and western analysis, and demonstrated comparable phenotypes in model organisms with reduced Gdf6 function. We observed a spectrum of ocular and skeletal anomalies in morphant zebrafish, the latter encompassing defective tail formation and altered expression of somite markers noggin1 and noggin2. Gdf6(+/-) mice exhibited variable ocular phenotypes compatible with phenotypes observed in patients and zebrafish. Key differences evident between patients and animal models included pleiotropic effects, variable expressivity and incomplete penetrance. These data establish the important role of this determinant in ocular and vertebral development, demonstrate the complex genetic inheritance of these phenotypes, and further understanding of BMP function and its contributions to human disease.

Indexed as

PenetranceAbnormalities, MultipleAmino Acid SequenceAnimalsDNA Mutational AnalysisGenes, ReporterGrowth Differentiation Factor 6HumansMiceModels, AnimalMolecular Sequence DataMutant ProteinsMutationOligonucleotides, AntisenseZebrafishZebrafish Proteinsgdf6a protein, zebrafishGDF6 protein, humanGdf6 protein, mouseGrowth Differentiation Factor 6Mutant ProteinsOligonucleotides, AntisenseZebrafish Proteins

Identifiers

PMID19129173
PMCPMC12118964
OpenAlexW2162251569

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.