Evidence map›Paper›PMID 19127382›Full record

ArticleCurrent microbiology2009

HU participates in expression of a specific set of genes required for growth and survival at acidic pH in Escherichia coli.

Hongkai Bi, Lianle Sun, Toshihiko Fukamachi, Hiromi Saito, Hiroshi Kobayashi

Abstract read
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In one paragraph

Article in Current microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hongkai BiGraduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan.
Lianle Sun
Toshihiko Fukamachi
Hiromi Saito
Hiroshi Kobayashi
Chiba University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The major histone-like Escherichia coli protein, HU, is composed of alpha and beta subunits respectively encoded by hupA and hupB in Escherichia coli. A mutant deficient in both hupA and hupB grew at a slightly slower rate than the wild type at pH 7.5. Growth of the mutant diminished with a decrease in pH, and no growth was observed at pH 4.6. Mutants of either hupA or hupB grew at all pH levels tested. The arginine-dependent survival at pH 2.5 was diminished approximately 60-fold by the deletion of both hupA and hupB, whereas the survival was slightly affected by the deletion of either hupA or hupB. The mRNA levels of adiA and adiC, which respectively encode arginine decarboxylase and arginine/agmatine antiporter, were low in the mutant deficient in both hupA and hupB. The deletion of both hupA and hupB had little effect on survival at pH 2.5 in the presence of glutamate or lysine, and expression of the genes for glutamate and lysine decarboxylases was not impaired by the deletion of the HU genes. These results suggest that HU regulates expression of the specific set of genes required for growth and survival in acidic environments.

Indexed as

Microbial ViabilityAcidsAmino Acid Transport SystemsAnti-Bacterial AgentsAntiportersCarboxy-LyasesCarrier ProteinsDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsGene DeletionGene Expression ProfilingGlutamic AcidLysineStress, PhysiologicalTranscription FactorsAcidsAdiC protein, E coliAmino Acid Transport SystemsAnti-Bacterial AgentsAntiportersarginine decarboxylaseCarboxy-LyasesCarrier ProteinsDNA-Binding ProteinsEscherichia coli ProteinsGlutamic AcidhupA protein, E coliHupB protein, E coliLysineTranscription Factors

Identifiers

PMID19127382
OpenAlexW2039125012

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.