Evidence map›Paper›PMID 19126777›Full record

ArticleHuman molecular genetics2009

Association of ESR1 gene tagging SNPs with breast cancer risk.

Alison M Dunning, Catherine S Healey, Caroline Baynes, Ana-Teresa Maia, Serena Scollen, Ana Vega, Raquel Rodríguez, Nuno L Barbosa-Morais, Bruce A J Ponder, SEARCH and 89 more

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 5 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 5 syntheses or guidelines pooled it, 97 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Association Between ESR1 PvuII, XbaI, and P325P Polymorphisms and Breast Cancer Susceptibility: A Meta-Analysis.Medical science monitor : international medical journal of experimental and clinical research · 2015
    Pooled it
  6. Trial
  7. Trial
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Journal of Cancer · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

99 authors at 20 institutions in 14 countries.

Alison M DunningDepartment of Oncology, University of Cambridge, Cambridge, UK. alisond@srl.cam.ac.uk
Catherine S Healey
Caroline Baynes
Ana-Teresa Maia
Serena Scollen
Ana Vega
Raquel Rodríguez
Nuno L Barbosa-Morais
Bruce A J Ponder
SEARCH
Yen-Ling Low
Sheila Bingham
EPIC
Christopher A Haiman
Loic Le Marchand
MEC
Annegien Broeks
Marjanka K Schmidt
ABCS
John Hopper
Melissa Southey
ABCFS
Matthias W Beckmann
Peter A Fasching
BBCC
Julian Peto
Nichola Johnson
BBCS
Stig E Bojesen
Børge Nordestgaard
CGPS
Roger L Milne
Javier Benitez
CNIO-BCS
Ute Hamann
Yon Ko
GENICA
Rita K Schmutzler
Barbara Burwinkel
GC-HBOC
Peter Schürmann
Thilo Dörk
HABCS
Tuomas Heikkinen
Heli Nevanlinna
HEBCS
Annika Lindblom
Sara Margolin
KARBAC
Arto Mannermaa
Veli-Matti Kosma
KBCS
Xiaoqing Chen
Amanda Spurdle
kConFab and the AOCS Management Group
Jenny Change-Claude
Dieter Flesch-Janys
MARIE
Fergus J Couch
Janet E Olson
for MCBCS
Gianluca Severi
Laura Baglietto
MCCS
Anne-Lise Børresen-Dale
Vessela Kristensen
NBCS
David J Hunter
Susan E Hankinson
NHS
Peter Devilee
Maaike Vreeswijk
ORIGO
Jolanta Lissowska
Louise Brinton
PBCS
Jianjun Liu
Per Hall
SASBAC
Daehee Kang
Keun-Young Yoo
SEBCS
Chen-Yang Shen
Jyh-Cherng Yu
TWBCS
Hoda Anton-Culver
Argyrios Ziogoas
UCIBCS
Alice Sigurdson
Jeff Struewing
USRTS
Douglas F Easton
Montserrat Garcia-Closas
Manjeet K Humphreys
Jonathan Morrison
Paul D P Pharoah
Karen A Pooley
Georgia Chenevix-Trench
BCAC
University of Cambridge · GBRoyal Brisbane and Women's Hospital · AUCancer Council Victoria · AUCancer Genetics (United States) · USInstitute of Cancer Research · GBThe University of Melbourne · AUBrigham and Women's Hospital · USCopenhagen University Hospital · DKDKFZ-ZMBH Alliance · DEGenome Institute of Singapore · SGGerman Cancer Research Center · DEHeidelberg University · DEHelsinki University Hospital · FIKarolinska University Hospital · SELeiden University Medical Center · NLMayo Clinic · USMedizinische Hochschule Hannover · DEMRC Epidemiology Unit · GBNational Human Genome Research Institute · USSeoul National University · KR

Funding

The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI PETER C LUCAS · 2005 to 2026
$49.9M
Northern California Cooperative Family Registry for Breast CancerU01CA069417 · NCI · NORTHERN CALIFORNIA CANCER CENTER · PI JOHN, ESTHER M. · 1995 to 2010
$22.4M
Characterizing Genetic Susceptibility to Breast and Prostate Cancer; the BPC3U01CA098233 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HUNTER, DAVID JOHN · 2003 to 2010
$10.8M
ONTARIO REGISTRY FOR STUDIES OF FAMILIAL BREAST CANCERU01CA069467 · NCI · CANCER CARE ONTARIO · PI ANDRULIS, IRENE L. · 1995 to 2010
$10.4M
THE AUSTRALIAN BREAST CANCER FAMILY REGISTRYU01CA069638 · NCI · UNIVERSITY OF MELBOURNE · PI HOPPER, JOHN L · 1995 to 2010
$6.6M
COMMON AND RARE SEQUENCE VARIANTS IN BREAST CANCER RISKR01CA121245 · NCI · UNIVERSITY OF UTAH · PI TAVTIGIAN, SEAN VAHRAM · 2007 to 2021
$4.9M
COHORT STUDY OF GENETIC SUSCEPTIBILITY TO BREAST CANCERR01CA065725 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HUNTER, DAVID JOHN · 1996 to 2010
$4.5M
Genetic epidemiology of cell division regulation in breast cancerR01CA122340 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2007 to 2011
$3.0M
Genetic determinants of postmenopausal breast cancerR01CA104021 · NCI · KAROLINSKA INSTITUTE · PI HALL, PER · 2005 to 2009
$2.1M
Cancer Research UK 10118Cancer Research UK 10124Cancer Research UK 11021Cancer Research UK 11022Cancer Research UK 19275Cancer Research UK C1287/A7497Cancer Research UK C20/A3084Cancer Research UK C490/A11021NCI NIH HHS CA065725NCI NIH HHS CA098233NCI NIH HHS CA122340NCI NIH HHS P50 CA116201NCI NIH HHS R01 CA065725NCI NIH HHS R01 CA 104021NCI NIH HHS R01 CA104021NCI NIH HHS R01 CA121245NCI NIH HHS R01-CA121245-01A2NCI NIH HHS R01 CA122340NCI NIH HHS U01 CA069417NCI NIH HHS U01 CA069467NCI NIH HHS U01 CA069638NCI NIH HHS U01 CA098233NCI NIH HHS U01 CA69417NCI NIH HHS U01 CA69467NCI NIH HHS U01 CA69638NCI NIH HHS U01-CA98233
6 · The paper itself

Abstract

We have conducted a three-stage, comprehensive single nucleotide polymorphism (SNP)-tagging association study of ESR1 gene variants (SNPs) in more than 55,000 breast cancer cases and controls from studies within the Breast Cancer Association Consortium (BCAC). No large risks or highly significant associations were revealed. SNP rs3020314, tagging a region of ESR1 intron 4, is associated with an increase in breast cancer susceptibility with a dominant mode of action in European populations. Carriers of the c-allele have an odds ratio (OR) of 1.05 [95% Confidence Intervals (CI) 1.02-1.09] relative to t-allele homozygotes, P = 0.004. There is significant heterogeneity between studies, P = 0.002. The increased risk appears largely confined to oestrogen receptor-positive tumour risk. The region tagged by SNP rs3020314 contains sequence that is more highly conserved across mammalian species than the rest of intron 4, and it may subtly alter the ratio of two mRNA splice forms.

Indexed as

Genetic Predisposition to DiseaseBreast NeoplasmsEstrogen Receptor alphaFemaleHaplotypesHumansNeoplasm StagingPolymorphism, Single NucleotideRNA, NeoplasmESR1 protein, humanEstrogen Receptor alphaRNA, Neoplasm

Identifiers

PMID19126777
PMCPMC2722230
OpenAlexW2167573976

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.