Evidence map›Paper›PMID 19124605›Full record

ArticleMolecular and cellular biology2009

Canonical initiation factor requirements of the Myc family of internal ribosome entry segments.

Keith A Spriggs, Laura C Cobbold, Catherine L Jopling, Rebecca E Cooper, Lindsay A Wilson, Mark Stoneley, Mark J Coldwell, Didier Poncet, Ya-Ching Shen, Simon J Morley and 2 more

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 65 citations in OpenAlex.

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  12. IRES Trans-Acting Factors, Key Actors of the Stress Response.International journal of molecular sciences · 2019
    Review
  13. Review
  14. Article
  15. Targeting RNA helicases in cancer: The translation trap.Biochimica et biophysica acta. Reviews on cancer · 2017
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Keith A SpriggsSchool of Pharmacy, University of Nottingham, University Park, Nottingham, United Kingdom.
Laura C Cobbold
Catherine L Jopling
Rebecca E Cooper
Lindsay A Wilson
Mark Stoneley
Mark J Coldwell
Didier Poncet
Ya-Ching Shen
Simon J Morley
Martin Bushell
Anne E Willis
University of Nottingham · GBUniversity of Sussex · GBCentre National de la Recherche Scientifique · FRNational Taiwan University · TW

Funding

Biotechnology and Biological Sciences Research Council BB/F02360X/1
6 · The paper itself

Abstract

Initiation of protein synthesis in eukaryotes requires recruitment of the ribosome to the mRNA and its translocation to the start codon. There are at least two distinct mechanisms by which this process can be achieved; the ribosome can be recruited either to the cap structure at the 5' end of the message or to an internal ribosome entry segment (IRES), a complex RNA structural element located in the 5' untranslated region (5'-UTR) of the mRNA. However, it is not well understood how cellular IRESs function to recruit the ribosome or how the 40S ribosomal subunits translocate from the initial recruitment site on the mRNA to the AUG initiation codon. We have investigated the canonical factors that are required by the IRESs found in the 5'-UTRs of c-, L-, and N-myc, using specific inhibitors and a tissue culture-based assay system, and have shown that they differ considerably in their requirements. The L-myc IRES requires the eIF4F complex and the association of PABP and eIF3 with eIF4G for activity. The minimum requirements of the N- and c-myc IRESs are the C-terminal domain of eIF4G to which eIF4A is bound and eIF3, although interestingly this protein does not appear to be recruited to the IRES RNA via eIF4G. Finally, our data show that all three IRESs require a ternary complex, although in contrast to c- and L-myc IRESs, the N-myc IRES has a lesser requirement for a ternary complex.

Indexed as

5' Untranslated RegionsCodon, InitiatorEukaryotic Initiation Factor-3Eukaryotic Initiation Factor-4FHeLa CellsHumansPeptide Chain Initiation, TranslationalPeptide Initiation FactorsProto-Oncogene Proteins c-mycRibosomesRibosome Subunits, Small, EukaryoticRNA CapsRNA, Messenger5' Untranslated RegionsCodon, InitiatorEukaryotic Initiation Factor-3Eukaryotic Initiation Factor-4FPeptide Initiation FactorsProto-Oncogene Proteins c-mycRNA CapsRNA, Messenger

Identifiers

PMID19124605
PMCPMC2648239
OpenAlexW2129955038

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.