Evidence map›Paper›PMID 19124572›Full record

ArticleJournal of bacteriology2009

The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea.

Camilla L Nesbø, Eric Bapteste, Bruce Curtis, Håkon Dahle, Philippe Lopez, Dave Macleod, Marlena Dlutek, Sharen Bowman, Olga Zhaxybayeva, Nils-Kåre Birkeland and 1 more

Abstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Progeny production in the periplasm of Thermosipho globiformans.Extremophiles : life under extreme conditions · 2017
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Biased gene transfer in microbial evolution.Nature reviews. Microbiology · 2011
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Camilla L NesbøDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada. nesbo@ualberta.ca
Eric Bapteste
Bruce Curtis
Håkon Dahle
Philippe Lopez
Dave Macleod
Marlena Dlutek
Sharen Bowman
Olga Zhaxybayeva
Nils-Kåre Birkeland
W Ford Doolittle

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lateral gene transfers (LGT) (also called horizontal gene transfers) have been a major force shaping the Thermosipho africanus TCF52B genome, whose sequence we describe here. Firmicutes emerge as the principal LGT partner. Twenty-six percent of phylogenetic trees suggest LGT with this group, while 13% of the open reading frames indicate LGT with Archaea.

Indexed as

Gene Transfer, HorizontalGenome, BacterialArchaeaBacteriaMolecular Sequence DataPhylogeny

Identifiers

PMID19124572
PMCPMC2648366

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.