Evidence map›Paper›PMID 19123862›Full record

ArticleJournal of the American Chemical Society2009

Protein structure refinement using 13C alpha chemical shift tensors.

Benjamin J Wylie, Charles D Schwieters, Eric Oldfield, Chad M Rienstra

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Applications of NMR to membrane proteins.Archives of biochemistry and biophysics · 2017
    Review
  6. Journal of magnetic resonance (San Diego, Calif. : 1997) · 2017
    Article
  7. Review
  8. Spatial reorientation experiments for NMR of solids and partially oriented liquids.Progress in nuclear magnetic resonance spectroscopy · 2015
    Review
  9. NMR studies of dynamic biomolecular conformational ensembles.Progress in nuclear magnetic resonance spectroscopy · 2015
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Ultrahigh resolution protein structures using NMR chemical shift tensors.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Benjamin J WylieDepartment of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, USA.
Charles D Schwieters
Eric Oldfield
Chad M Rienstra

Funding

Biomedical ImagingZIACT000090 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI TRUS, BENES L · 2009 to 2018
$7.8M
Structures of Protein Aggregates by Solid-State NMRR01GM073770 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIENSTRA, CHAD M · 2007 to 2014
$2.6M
Metalloprotein Structure, Function and InhibitionR01GM073216 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2005 to 2008
$1.1M
Intramural NIH HHSNIGMS NIH HHS GM73216NIGMS NIH HHS GM73770NIGMS NIH HHS R01 GM073216NIGMS NIH HHS R01 GM073770
6 · The paper itself

Abstract

We have obtained the (13)C alpha chemical shift tensors for each amino acid in the protein GB1. We then developed a CST force field and incorporated this into the Xplor-NIH structure determination program. GB1 structures obtained by using CST restraints had improved precision over those obtained in the absence of CST restraints and were also more accurate. When combined with isotropic chemical shifts, distance, and vector angle restraints, the root-mean squared error with respect to existing X-ray structures was better than approximately 1.0 A. These results are of broad general interest since they show that chemical shift tensors can be used in protein structure refinement, improving both structural accuracy and precision, opening up the way to accurate de novo structure determination.

Indexed as

Carbon IsotopesComputer SimulationModels, MolecularNuclear Magnetic Resonance, BiomolecularProteinsProtein Structure, TertiaryCarbon IsotopesProteins

Identifiers

PMID19123862
PMCPMC2751586

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.