ArticleNature genetics2009
A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies.
Article in Nature genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.
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Who cites it
106 citing papers in PubMed.
- Transcriptional Analysis of Tissues in Tartary Buckwheat Seedlings Under IAA Stimulation.Genes · 2024Article
- Are cereal grasses a single genetic system?Nature plants · 2024Article
- Cytological, transcriptome and miRNome temporal landscapes decode enhancement of rice grain size.BMC biology · 2023Article
- An Efficient Method to Prepare Barcoded cDNA Libraries from Plant Callus for Long-Read Sequencing.Methods and protocols · 2023Article
- Article
- A novel adenylate isopentenyltransferase 5 regulates shoot branching via the ATTTA motif in Camellia sinensis.BMC plant biology · 2021Article
- Genome-wide analysis of spatiotemporal expression patterns during rice leaf development.BMC genomics · 2021Article
- Understanding Omics Driven Plant Improvement andFrontiers in genetics · 2021Review
- Article
- Machine Learning Enables High-Throughput Phenotyping for Analyses of the Genetic Architecture of Bulliform Cell Patterning in Maize.G3 (Bethesda, Md.) · 2019Article
- Gene Expression Maps in Plants: Current State and Prospects.Plants (Basel, Switzerland) · 2019Review
- An optimized protocol for isolation of high-quality RNA through laser capture microdissection of leaf material.Plant direct · 2019Article
- Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.Rice (New York, N.Y.) · 2019Article
- The fungal ribonuclease-like effector protein CSEP0064/BEC1054 represses plant immunity and interferes with degradation of host ribosomal RNA.PLoS pathogens · 2019Article
- A gene expression map of shoot domains reveals regulatory mechanisms.Nature communications · 2019Article
- Cell Type-Specific Transcriptomics of Lateral Root Formation and Plasticity.Frontiers in plant science · 2019Review
- Global dissection of alternative splicing uncovers transcriptional diversity in tissues and associates with the flavonoid pathway in tea plant (Camellia sinensis).BMC plant biology · 2018Article
- Stage-Specific Gene Profiling of Germinal Cells Helps Delineate the Mitosis/Meiosis Transition.Plant physiology · 2018Article
- High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.Nature communications · 2018Article
- Nuclear Transcriptomes at High Resolution Using Retooled INTACT.Plant physiology · 2018Article
46 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
14 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The functions of the plant body rely on interactions among distinct and nonequivalent cell types. The comparison of transcriptomes from different cell types should expose the transcriptional networks that underlie cellular attributes and contributions. Using laser microdissection and microarray profiling, we have produced a cell type transcriptome atlas that includes 40 cell types from rice (Oryza sativa) shoot, root and germinating seed at several developmental stages, providing patterns of cell specificity for individual genes and gene classes. Cell type comparisons uncovered previously unrecognized properties, including cell-specific promoter motifs and coexpressed cognate binding factor candidates, interaction partner candidates and hormone response centers. We inferred developmental regulatory hierarchies of gene expression in specific cell types by comparison of several stages within root, shoot and embryo.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.