Evidence map›Paper›PMID 19121383›Full record

ArticleGenomics2009

Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches.

Michelle L Brinkmeier, Shannon W Davis, Piero Carninci, James W MacDonald, Jun Kawai, Debashis Ghosh, Yoshihide Hayashizaki, Robert H Lyons, Sally A Camper

RetractedOpen access · greenAbstract read
In one paragraph

Article in Genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Pooled it
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  17. Imaging of Endoplasmic Reticulum CaFrontiers in endocrinology · 2020
    Article
  18. Article
  19. Genetic variation in thyroid folliculogenesis influences susceptibility to hypothyroidism-induced hearing impairment.Mammalian genome : official journal of the International Mammalian Genome Society · 2019
    Article
  20. Article
4 · The record

Corrections and comments

  • Reinstatement · 2011-11-01Concerns/Issues about Authorship/Affiliation · · The article was retracted 3.21.2011 (https://www.sciencedirect.com/science/article/pii/S0888754311000632) then reinstated 11.1.2011 (https://www.sciencedirect.com/science/article/pii/S0888754311002242).
5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Michelle L BrinkmeierDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109-5618, USA.
Shannon W Davis
Piero Carninci
James W MacDonald
Jun Kawai
Debashis Ghosh
Yoshihide Hayashizaki
Robert H Lyons
Sally A Camper
University of Michigan · USRIKEN Center for Integrative Medical Sciences · JP

Funding

CELL-SPECIFIC EXPRESSION IN THE PITUITARY GLANDR01HD034283 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CAMPER, SALLY A. · 1996 to 2021
$7.7M
A Panhypopitutitary Mouse MutationR37HD030428 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CAMPER, SALLY A. · 2002 to 2011
$3.4M
Statistical Methods for the Analysis of Microarray DataR01GM072007 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GHOSH, DEBASHIS · 2004 to 2008
$1.1M
NICHD NIH HHS HD34283NICHD NIH HHS R01 HD034283NICHD NIH HHS R37 HD030428NICHD NIH HHS R37HD30428NIGMS NIH HHS R01 GM072007NIGMS NIH HHS R01GM72007
6 · The paper itself

Abstract

We report a catalog of the mouse embryonic pituitary gland transcriptome consisting of five cDNA libraries including wild type tissue from E12.5 and E14.5, Prop1(df/df) mutant at E14.5, and two cDNA subtractions: E14.5 WT-E14.5 Prop1(df/df) and E14.5 WT-E12.5 WT. DNA sequence information is assembled into a searchable database with gene ontology terms representing 12,009 expressed genes. We validated coverage of the libraries by detecting most known homeobox gene transcription factor cDNAs. A total of 45 homeobox genes were detected as part of the pituitary transcriptome, representing most expected ones, which validated library coverage, and many novel ones, underscoring the utility of this resource as a discovery tool. We took a similar approach for signaling-pathway members with novel pituitary expression and found 157 genes related to the BMP, FGF, WNT, SHH and NOTCH pathways. These genes are exciting candidates for regulators of pituitary development and function.

Indexed as

Computational BiologyGene Expression ProfilingGene Expression Regulation, DevelopmentalAnimalsBone Morphogenetic Protein Receptors, Type IGene LibraryGenomicsHomeodomain ProteinsMiceModels, AnimalPituitary GlandSignal TransductionTranscription FactorsBone Morphogenetic Protein Receptors, Type IHomeodomain ProteinsProphet of Pit-1 proteinTranscription Factors

Identifiers

PMID19121383
PMCPMC2935795
OpenAlexW1976022408

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.