Evidence map›Paper›PMID 19115055›Full record

ArticleCurrent genetics2009

Characterization and mRNA expression profile of the TbNre1 gene of the ectomycorrhizal fungus Tuber borchii.

Michele Guescini, L Stocchi, D Sisti, S Zeppa, E Polidori, P Ceccaroli, R Saltarelli, V Stocchi

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Article in Current genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.3field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Michele GuesciniDepartment of Biomolecular Science, Institute of Biological Chemistry G. Fornaini, University of Urbino Carlo Bo, Via Saffi, 2, 61029, Urbino, Italy. michele.guescini@uniurb.it
L Stocchi
D Sisti
S Zeppa
E Polidori
P Ceccaroli
R Saltarelli
V Stocchi
University of Urbino · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study focuses on the cloning and characterization of the major nitrogen regulator element from the ectomycorrhizal fungus Tuber borchii, TbNre1. Sequence analysis of the predicted protein and complementation experiments in Neurospora crassa demonstrated that the cloned gene is orthologous to areA/nit-2 gene. Transcriptional expression investigations by real-time RT-PCR showed TbNre1 up-regulation in the presence of nitrate or in the absence of nitrogen during free-living mycelium growth. On the contrary, TbNre1 mRNA levels remained at basal values in the presence of preferred nitrogen sources like ammonium and glutamine. Furthermore, TbNre1 mRNA was found to be up-regulated during T. borchii and T. platyphyllos interaction. All these data suggest that the regulatory protein TBNRE1 could play a major role in regulating N metabolism genes of T. borchii in the free living mycelium and in T. borchii-T. platyphyllos interaction. Finally, the possible role of the transcription factor TBNRE1 in the induction of proteases and virulence-like genes, necessary in ectomycorrhizal establishment, was also discussed.

Indexed as

Amino Acid SequenceAscomycotaBlotting, SouthernCloning, MolecularDNA, FungalFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalMolecular Sequence DataMyceliumMycorrhizaeNitrogenPII Nitrogen Regulatory ProteinsRecombinant ProteinsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerDNA, FungalFungal ProteinsNitrogenPII Nitrogen Regulatory ProteinsRecombinant ProteinsRNA, Messenger

Identifiers

PMID19115055
OpenAlexW1993306737

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.