ArticleCellular & molecular biology letters2009
A transcriptionally active copia-like retroelement in Citrus limon.
Article in Cellular & molecular biology letters, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 32 citations in OpenAlex.
- Characterization of active transposable elements and their new insertions in tuber propagated greater yam (Dioscorea alata).BMC genomics · 2024Article
- Identification and characterization of RuvBL DNA helicase genes for tolerance against abiotic stresses in bread wheat (Triticum aestivum L.) and related species.Functional & integrative genomics · 2023Article
- Review
- Long terminal repeats (LTR) and transcription factors regulate PHRE1 and PHRE2 activity in Moso bamboo under heat stress.BMC plant biology · 2021Article
- Article
- An RNA-Seq-based reference transcriptome for Citrus.Plant biotechnology journal · 2016Article
- Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome.Mobile DNA · 2016Article
- Review
- How a retrotransposon exploits the plant's heat stress response for its activation.PLoS genetics · 2014Article
- Comparative transcriptional analysis reveals differential gene expression between Sand Daffodil tissues.Genetica · 2013Article
- Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges.The Plant cell · 2012Article
- Isolation and characterization of Ty1-copia group of LTRs in genome of three species of Datura: D. innoxia, D. stramonium and D. metel.Physiology and molecular biology of plants : an international journal of functional plant biology · 2011Article
- The struggle for life of the genome's selfish architects.Biology direct · 2011Review
- The stem cell state in plant development and in response to stress.Frontiers in plant science · 2011Article
- The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The plant nuclear genome is largely composed of mobile DNA, which can rearrange genomes and other individual gene structure and also affect gene regulation through various promoted activities: transposition, insertion, excision, chromosome breakage, and ectopic recombination. Ty1-copia-like retrotransposon is a widespread class of transposable elements in the plant kingdom, representing a large part of the total DNA content. Here, a novel retrotransposon-like sequence was isolated and identified as the Ty1-copia-like reverse transcriptase domain (named here CLCoy1), based on the homology of known elements. Fluorescence in situ hybridization, revealed that CLCoy1 was mainly located in telomeric and sub-telomeric regions along the Citrus chromosomes. CLCoy1 composes 3.6% of the genome and, interestingly, while transposons are mostly specific to a species, this element was identified in other Citrus species such as Citrus aurantium, Fortunella margarita and Citrus paradisi, but undetected in Poncirus trifoliata. We also determined that wounding, salt and cell culture stress produced transcriptional activation of this novel retroelement in Citrus limon. The novel Ty1-copia-like element CLCoy1 may have played a major role in shaping genome structure and size during Citrus species evolution.
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