Evidence map›Paper›PMID 19114496›Full record

ArticleJournal of bacteriology2009

Analysis of ColE1 MbeC unveils an extended ribbon-helix-helix family of nicking accessory proteins.

Athanasia Varsaki, Gabriel Moncalián, Maria del Pilar Garcillán-Barcia, Constantin Drainas, Fernando de la Cruz

Abstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Article
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  6. Article
  7. Review
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  9. Article
  10. Frontiers in microbiology · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. TheFrontiers in microbiology · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Mobility of plasmids.Microbiology and molecular biology reviews : MMBR · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Athanasia VarsakiDepartment of Chemistry, University of Ioannina, Greece.
Gabriel Moncalián
Maria del Pilar Garcillán-Barcia
Constantin Drainas
Fernando de la Cruz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MbeC is a 13-kDa ColE1-encoded protein required for efficient mobilization of ColE1, a plasmid widely used in cloning vector technology. MbeC protein was purified and used for in vitro DNA binding, which showed that it binds specifically double-stranded DNA (dsDNA) containing the ColE1 oriT. Amino acid sequence comparison and secondary structure prediction imply that MbeC is related to the ribbon-helix-helix (RHH) protein family. Alignment with RHH members pointed to a conserved arginine (R13 in MbeC) that was mutated to alanine. The mutant MbeC(R13A) was unable to bind either single-stranded DNA or dsDNA. Limited proteolysis fragmented MbeC in two stable folding domains: the N-terminal domain, which contains the RHH motif, and the C-terminal domain, which comprises a signature shared by nicking accessory proteins. The results indicate that MbeC plays a similar role in conjugation as TraY and TrwA of plasmids F and R388, respectively. Thus, it appears that an extended, possibly universal mechanism of DNA conjugative processing exists, in which oriT-processing is carried out by relaxases assisted by homologous nicking accessory proteins. This mechanism seems to be shared by all major conjugative systems analyzed thus far.

Indexed as

Conjugation, GeneticAmino Acid SequenceBacterial ProteinsBacteriocin PlasmidsCodon, InitiatorDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsModels, MolecularMolecular Sequence DataReplication OriginBacterial ProteinsCodon, InitiatorDNA-Binding ProteinsEscherichia coli ProteinsMob protein, Bacteria

Identifiers

PMID19114496
PMCPMC2648203

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.