Evidence map›Paper›PMID 19114490›Full record

ArticleJournal of bacteriology2009

T-POP array identifies EcnR and PefI-SrgD as novel regulators of flagellar gene expression.

Christopher E Wozniak, Changhan Lee, Kelly T Hughes

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Applied and environmental microbiology · 2018
    Article
  6. Article
  7. An Updated View on the Rck Invasin ofFrontiers in cellular and infection microbiology · 2017
    Review
  8. Flagella-independent surface motility in Salmonella enterica serovar Typhimurium.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  9. Review
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Christopher E WozniakDepartment of Microbiology, University of Washington, Seattle, 98195, USA.
Changhan Lee
Kelly T Hughes
University of Washington · USUniversity of Utah · US

Funding

Coupling gene regulation to flagellar morphogenesisR01GM056141 · NIGMS · UNIVERSITY OF WASHINGTON · PI HUGHES, KELLY T · 1998 to 2023
$8.3M
NIGMS NIH HHS GM56141NIGMS NIH HHS R01 GM056141
6 · The paper itself

Abstract

The T-POP transposon was employed in a general screen for tetracycline (Tet)-induced chromosomal loci that exhibited Tet-activated or Tet-repressed expression of a fliC-lac transcriptional fusion. Insertions that activated flagellar transcription were located in flagellar genes. T-POP insertions that exhibited Tet-dependent fliC-lac inhibition were isolated upstream of the ecnR, fimZ, pefI-srgD, rcsB, and ydiV genes and in the flagellar gene flgA, which is located upstream of the anti-sigma(28) factor gene flgM. When expressed from the chromosomal P(araBAD) promoter, EcnR, FimZ, PefI-SrgD, and RcsB inhibited the transcription of the flagellar class 1 flhDC operon. YdiV, which is weakly homologous to EAL domain proteins involved in cyclic-di-GMP regulation, appears to act at a step after class 1 transcription. By using a series of deletions of the regulatory genes to try to disrupt each pathway, these regulators were found to act largely independently of one another. These results identify EcnR and PefI-SrgD as additional components of the complex regulatory network controlling flagellar expression.

Indexed as

DNA Transposable ElementsGene Expression Regulation, BacterialBacterial ProteinsCulture MediaFlagellaGene DeletionGenes, RegulatorMutagenesis, InsertionalOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticSalmonella typhimuriumBacterial ProteinsCulture MediaDNA Transposable Elements

Identifiers

PMID19114490
PMCPMC2648201
OpenAlexW2019358264

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.