Evidence map›Paper›PMID 19114487›Full record

ArticleJournal of bacteriology2009

Archaeal ApbC/Nbp35 homologs function as iron-sulfur cluster carrier proteins.

Jeffrey M Boyd, Randy M Drevland, Diana M Downs, David E Graham

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Metabolic Adaptation to Sulfur of HyperthermophilicInternational journal of molecular sciences · 2020
    Article
  4. The bacterial MrpScientific reports · 2019
    Article
  5. Fe-S Cluster Assembly in Oxymonads and Related Protists.Molecular biology and evolution · 2018
    Article
  6. Article
  7. Fe-S cluster assembly in the supergroup Excavata.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jeffrey M BoydDepartment of Bacteriology, University of Wisconsin, Madison, 537061, USA.
Randy M Drevland
Diana M Downs
David E Graham
The University of Texas at Austin · USUniversity of Wisconsin–Madison · US

Funding

NOVEL SYNTHETIC PATHWAY FOR THE PYRIMIDINE OF THIAMINER01GM047296 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DOWNS, DIANA M. · 1993 to 2010
$3.1M
Archaeal gene recruitment by the ChlamydialesR21AI064444 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI GRAHAM, DAVID E · 2007 to 2008
$405k
Probing Metabolic Complexity Using a Bacterial Model SystemF32GM079938 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BOYD, JEFF M · 2007 to 2008
$96k
NIAID NIH HHS AI064444NIAID NIH HHS R21 AI064444NIGMS NIH HHS F32 GM079938NIGMS NIH HHS GM47296NIGMS NIH HHS R01 GM047296PHS HHS 144PZ38
6 · The paper itself

Abstract

Iron-sulfur clusters may have been the earliest catalytic cofactors on earth, and most modern organisms use them extensively. Although members of the Archaea produce numerous iron-sulfur proteins, the major cluster assembly proteins found in the Bacteria and Eukarya are not universally conserved in archaea. Free-living archaea do have homologs of the bacterial apbC and eukaryotic NBP35 genes that encode iron-sulfur cluster carrier proteins. This study exploits the genetic system of Salmonella enterica to examine the in vivo functionality of apbC/NBP35 homologs from three archaea: Methanococcus maripaludis, Methanocaldococcus jannaschii, and Sulfolobus solfataricus. All three archaeal homologs could correct the tricarballylate growth defect of an S. enterica apbC mutant. Additional genetic studies showed that the conserved Walker box serine and the Cys-X-X-Cys motif of the M. maripaludis MMP0704 protein were both required for function in vivo but that the amino-terminal ferredoxin domain was not. MMP0704 protein and an MMP0704 variant protein missing the N-terminal ferredoxin domain were purified, and the Fe-S clusters were chemically reconstituted. Both proteins bound equimolar concentrations of Fe and S and had UV-visible spectra similar to those of known [4Fe-4S] cluster-containing proteins. This family of dimeric iron-sulfur carrier proteins evolved before the archaeal and eukaryal lineages diverged, representing an ancient mode of cluster assembly.

Indexed as

Archaeal ProteinsIron-Sulfur ProteinsMethanococcalesMethanococcusSulfolobusAdenosine TriphosphatasesAmino Acid SequenceBacterial ProteinsGenetic Complementation TestGTP-Binding ProteinsMolecular Sequence DataMutationProtein Structure, TertiarySaccharomyces cerevisiae ProteinsSequence AlignmentSequence Homology, Amino AcidAdenosine TriphosphatasesApbC protein, Salmonella typhimuriumArchaeal ProteinsBacterial ProteinsGTP-Binding ProteinsIron-Sulfur ProteinsNBP35 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID19114487
PMCPMC2648223
OpenAlexW2026899929

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.