ArticlePlant cell reports2009
Comparative sequence analysis for Brassica oleracea with similar sequences in B. rapa and Arabidopsis thaliana.
Article in Plant cell reports, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
13 citing papers in PubMed, 31 citations in OpenAlex.
- Genetic characterization and fine mapping for multi-inflorescence in Brassica napus L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Genome-wide characterization of DNA methylation, small RNA expression, and histone H3 lysine nine di-methylation in Brassica rapa L.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018Article
- Dietary Sulforaphane in Cancer Chemoprevention: The Role of Epigenetic Regulation and HDAC Inhibition.Antioxidants & redox signaling · 2015Review
- High-density single nucleotide polymorphism (SNP) array mapping in Brassica oleracea: identification of QTL associated with carotenoid variation in broccoli florets.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Comparative genomics of Brassicaceae crops.Breeding science · 2014Review
- Identification of suitable qPCR reference genes in leaves of Brassica oleracea under abiotic stresses.Ecotoxicology (London, England) · 2014Article
- High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves.BMC genomics · 2013Article
- Molecular and functional characterization of broccoli EMBRYONIC FLOWER 2 genes.Plant & cell physiology · 2012Article
- Promoter variation and transcript divergence in Brassicaceae lineages of FLOWERING LOCUS T.PloS one · 2012Article
- BraSto, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in the gene space.Plant molecular biology · 2011Article
- QTL analysis of leaf architecture.Journal of plant research · 2010Review
- A Brassica rapa linkage map of EST-based SNP markers for identification of candidate genes controlling flowering time and leaf morphological traits.DNA research : an international journal for rapid publication of reports on genes and genomes · 2009Article
- Development and evaluation of single-nucleotide polymorphism markers in allotetraploid rapeseed (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We sequenced five BAC clones of Brassica oleracea doubled haploid 'Early Big' broccoli containing major genes in the aliphatic glucosinolate pathway, and comparatively analyzed them with similar sequences in A. thaliana and B. rapa. Additionally, we included in the analysis published sequences from three other B. oleracea BAC clones and a contig of this species corresponding to segments in A. thaliana chromosomes IV and V. A total of 2,946 kb of B. oleracea, 1,069 kb of B. rapa sequence and 2,607 kb of A. thaliana sequence were compared and analyzed. We found conserved collinearity for gene order and content restricted to specific chromosomal segments, but breaks in collinearity were frequent resulting in gene absence likely not due to gene loss but rearrangements. B. oleracea has the lowest gene density of the three species, followed by B. rapa. The genome expansion of the Brassica species, B. oleracea in particular, is due to larger introns and gene spacers resulting from frequent insertion of DNA transposons and retrotransposons. These findings are discussed in relation to the possible origin and evolution of the Brassica genomes.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.