Evidence map›Paper›PMID 19112554›Full record

ArticlePlant molecular biology2009

Targeted transgene integration in plant cells using designed zinc finger nucleases.

Charles Q Cai, Yannick Doyon, W Michael Ainley, Jeffrey C Miller, Russell C Dekelver, Erica A Moehle, Jeremy M Rock, Ya-Li Lee, Robbi Garrison, Lisa Schulenberg and 12 more

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 218 citations in OpenAlex.

  1. Review
  2. Recent Advances in Tomato Gene Editing.International journal of molecular sciences · 2024
    Review
  3. Article
  4. Review
  5. Review
  6. Expanding Gene-Editing Potential in Crop Improvement with Pangenomes.International journal of molecular sciences · 2022
    Review
  7. Review
  8. Review
  9. Maize transformation: history, progress, and perspectives.Molecular breeding : new strategies in plant improvement · 2021
    Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 1 institution in 1 country.

Charles Q CaiDow AgroSciences, LLC, 9330 Zionsville Road, Indianapolis, IN 46268, USA.
Yannick Doyon
W Michael Ainley
Jeffrey C Miller
Russell C Dekelver
Erica A Moehle
Jeremy M Rock
Ya-Li Lee
Robbi Garrison
Lisa Schulenberg
Ryan Blue
Andrew Worden
Lisa Baker
Farhoud Faraji
Lei Zhang
Michael C Holmes
Edward J Rebar
Trevor N Collingwood
Beth Rubin-Wilson
Philip D Gregory
Fyodor D Urnov
Joseph F Petolino
Sangamo BioSciences (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Targeted transgene integration in plants remains a significant technical challenge for both basic and applied research. Here it is reported that designed zinc finger nucleases (ZFNs) can drive site-directed DNA integration into transgenic and native gene loci. A dimer of designed 4-finger ZFNs enabled intra-chromosomal reconstitution of a disabled gfp reporter gene and site-specific transgene integration into chromosomal reporter loci following co-transformation of tobacco cell cultures with a donor construct comprised of sequences necessary to complement a non-functional pat herbicide resistance gene. In addition, a yeast-based assay was used to identify ZFNs capable of cleaving a native endochitinase gene. Agrobacterium delivery of a Ti plasmid harboring both the ZFNs and a donor DNA construct comprising a pat herbicide resistance gene cassette flanked by short stretches of homology to the endochitinase locus yielded up to 10% targeted, homology-directed transgene integration precisely into the ZFN cleavage site. Given that ZFNs can be designed to recognize a wide range of target sequences, these data point toward a novel approach for targeted gene addition, replacement and trait stacking in plants.

Indexed as

Amino Acid SequenceBase SequenceBinding SitesCells, CulturedChitinasesEndonucleasesGlucuronidaseGreen Fluorescent ProteinsMolecular Sequence DataNicotianaPolymerase Chain ReactionRecombinant Fusion ProteinsRecombination, GeneticTransfectionTransgenesZinc FingersChitinasesEndonucleasesGlucuronidaseGreen Fluorescent ProteinsRecombinant Fusion Proteins

Identifiers

PMID19112554
OpenAlexW2101655911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.