Evidence map›Paper›PMID 19111659›Full record

ArticleMolecular cell2008

Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.

Xiao Luo, He-Hsuan Hsiao, Mikhail Bubunenko, Gert Weber, Donald L Court, Max E Gottesman, Henning Urlaub, Markus C Wahl

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 115 citations in OpenAlex.

  1. Review
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  18. Article
  19. Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Xiao LuoResearch Group X-Ray Crystallography, Max-Planck-Institute for Biophysical Chemistry, D-37077 Göttingen, Germany.
He-Hsuan Hsiao
Mikhail Bubunenko
Gert Weber
Donald L Court
Max E Gottesman
Henning Urlaub
Markus C Wahl
Max Planck Institute for Biophysical Chemistry · DECenter for Cancer Research · USColumbia University Irving Medical Center · USNational Cancer Institute · USUniversity of Göttingen · DE

Funding

Lambda Genetic Networks and Lambda Red-Mediated RecombinationZIABC010336 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI COURT, DONALD · 2009 to 2020
$18.9M
CONTROL OF TRANSCRIPTION TERMINATION IN E. COLIR01GM037219 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GOTTESMAN, MAX ELLIOT · 1986 to 2017
$6.6M
Recombineering: Chromosome Engineering by Homologous RecZ01BC010336 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI COURT, DONALD · 2000 to 2008
$2.8M
Control of Transcription Termination in E. coliR56GM037219 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GOTTESMAN, MAX ELLIOT · 2009 to 2009
$399k
Intramural NIH HHS Z01 BC010336NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NIGMS NIH HHS GM37219NIGMS NIH HHS R01 GM037219NIGMS NIH HHS R56 GM037219
6 · The paper itself

Abstract

Protein S10 is a component of the 30S ribosomal subunit and participates together with NusB protein in processive transcription antitermination. The molecular mechanisms by which S10 can act as a translation or a transcription factor are not understood. We used complementation assays and recombineering to delineate regions of S10 dispensable for antitermination, and determined the crystal structure of a transcriptionally active NusB-S10 complex. In this complex, S10 adopts the same fold as in the 30S subunit and is blocked from simultaneous association with the ribosome. Mass spectrometric mapping of UV-induced crosslinks revealed that the NusB-S10 complex presents an intermolecular, composite, and contiguous binding surface for RNAs containing BoxA antitermination signals. Furthermore, S10 overproduction complemented a nusB null phenotype. These data demonstrate that S10 and NusB together form a BoxA-binding module, that NusB facilitates entry of S10 into the transcription machinery, and that S10 represents a central hub in processive antitermination.

Indexed as

Terminator Regions, GeneticTranscription, GeneticBase SequenceCrystallography, X-RayEscherichia coliEscherichia coli ProteinsModels, MolecularMolecular Sequence DataMutationPhenotypeProtein BindingProtein MultimerizationProtein Structure, SecondaryRibosomal ProteinsRibosomesRNA, BacterialEscherichia coli ProteinsNusB protein, E coliRibosomal Proteinsribosomal protein S10RNA, BacterialTranscription Factors

Identifiers

PMID19111659
PMCPMC2627990
OpenAlexW2023396205

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.