Evidence map›Paper›PMID 19111598›Full record

ArticleGene2009

Alternative splicing and promoter use in TFII-I genes.

Aleksandr V Makeyev, Dashzeveg Bayarsaihan

Abstract read
In one paragraph

Article in Gene, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Deletion ofBiomedicines · 2023
    Article
  4. Pathophysiology of TFII-I: Old Guard Wearing New Hats.Trends in molecular medicine · 2017
    Review
  5. Review
  6. Article
  7. Evolution of general transcription factors.Journal of molecular evolution · 2013
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Aleksandr V MakeyevDepartment of Molecular, Cellular and Craniofacial Biology, Birth Defects Center, University of Louisville, Louisville, KY 40202, USA. aleksandr.makeyev@gmail.com
Dashzeveg Bayarsaihan
UConn Health · USUniversity of Louisville · US

Funding

ROLE OF TFII-I IN CRANIOFACIAL DEVELOPMENTR01DE017205 · NIDCR · UNIVERSITY OF LOUISVILLE · PI BAYARSAIHAN, DASHZEVEG · 2006 to 2009
$1.5M
Role of TFII-I in Craniofacial DevelopmentK02DE018412 · NIDCR · UNIVERSITY OF LOUISVILLE · PI BAYARSAIHAN, DASHZEVEG · 2007 to 2011
$477k
NIDCR NIH HHS K02 DE018412NIDCR NIH HHS K02 DE18412NIDCR NIH HHS R01 DE017205PHS HHS KSEF-1122-RDE-009
6 · The paper itself

Abstract

TFII-I proteins are ubiquitously expressed transcriptional factors involved in both basal transcription and signal transduction activation or repression. TFII-I proteins are detected as early as at two-cell stage and exhibit distinct and dynamic expression patterns in developing embryos as well as mark regional variation in the adult mouse brain. Analysis of atypical small and rare chromosomal deletions at 7q11.23 points to TFII-I genes (GTF2I and GTF2IRD1) as the prime candidates responsible for craniofacial and cognitive abnormalities in the Williams-Beuren syndrome. TFII-I genes are often subjected to alternative splicing, which generates isoforms that show different activities and play distinct biological roles. The coding regions of TFII-I genes are composed of more than 30 exons and are well conserved among vertebrates. However, their 5' untranslated regions are not as well conserved and all poorly characterized. In the present work, we analyzed promoter regions of TFII-I genes and described their additional exons, as well as tested tissue specificity of both previously reported and novel alternatively spliced isoforms. Our comprehensive analysis leads to further elucidation of the functional heterogeneity of TFII-I proteins, provides hints on search for regulatory pathways governing their expression, and opens up possibilities for examining the effect of different haplotypes on their promoter functions.

Indexed as

Alternative SplicingPromoter Regions, GeneticAnimalsBase SequenceChromosome DeletionChromosomes, Human, Pair 7DNA PrimersHumansMiceReverse Transcriptase Polymerase Chain ReactionRNA, MessengerTranscription Factors, TFIIDNA PrimersGTF2I protein, humanRNA, MessengerTranscription Factors, TFII

Identifiers

PMID19111598
PMCPMC2643308
OpenAlexW2007445855

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.