Evidence map›Paper›PMID 19110458›Full record

ArticleMolecular cell2009

Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 3' end processing factor Pcf11.

Sara Ann Johnson, Gabrielle Cubberley, David L Bentley

Abstract read
In one paragraph

Article in Molecular cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Viral interference of nucleocytoplasmic transport.The Journal of biological chemistry · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Global Co-regulatory Cross Talk Between mMolecular neurobiology · 2025
    Article
  11. Review
  12. Nuclear mRNA export.Acta biochimica et biophysica Sinica · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Nuclear mRNA Export and Aging.International journal of molecular sciences · 2022
    Review
  17. Review
  18. Review
  19. Article
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Sara Ann JohnsonDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Gabrielle Cubberley
David L Bentley

Funding

Coupling of Transcription with Pre-mRNA MetabolismR01GM058613 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI BENTLEY, DAVID L · 1999 to 2014
$5.5M
NIGMS NIH HHS GM58163NIGMS NIH HHS R01 GM058613
6 · The paper itself

Abstract

We investigated recruitment of the yeast mRNA export factor Yra1 to the transcription elongation complex (TEC). Previously, the Sub2 helicase subunit of TREX was proposed to recruit Yra1. We report that Sub2 is dispensable for Yra1 recruitment, but the cleavage/polyadenylation factor, CF1A, is required. Yra1 binds directly to the Zn finger/Clp1 region of Pcf11, the pol II CTD-binding subunit of CF1A, and this interaction is conserved between their human homologs. Tethering of Pcf11 to nascent mRNA is sufficient to enhance Yra1 recruitment. Interaction with Pcf11 can therefore explain Yra1 binding to the TEC independently of Sub2. We propose that after initially binding to Pcf11, Yra1 is transferred to Sub2. Consistent with this idea, Pcf11 binds the same regions of Yra1 that also contact Sub2, indicating a mutually exclusive interaction. These results suggest a mechanism for cotranscriptional assembly of the export competent mRNP and for coordinating export with 3' end processing.

Indexed as

Active Transport, Cell NucleusAdenosine TriphosphatasesAmino Acid SequenceBinding SitesModels, BiologicalMolecular Sequence DatamRNA Cleavage and Polyadenylation FactorsNuclear ProteinsRibonucleoproteinsRNA 3' End ProcessingRNA-Binding ProteinsRNA, MessengerRNA TransportSaccharomyces cerevisiae ProteinsAdenosine Triphosphatasesmessenger ribonucleoproteinmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsPCF11 protein, S cerevisiaeRibonucleoproteinsRNA-Binding ProteinsRNA-dependent ATPaseRNA, MessengerSaccharomyces cerevisiae ProteinsYRA1 protein, S cerevisiae

Identifiers

PMID19110458
PMCPMC2659397

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.