Evidence map›Paper›PMID 19110214›Full record

ArticleAmerican journal of human genetics2009

A recessive skeletal dysplasia, SEMD aggrecan type, results from a missense mutation affecting the C-type lectin domain of aggrecan.

Stuart W Tompson, Barry Merriman, Vincent A Funari, Maryline Fresquet, Ralph S Lachman, David L Rimoin, Stanley F Nelson, Michael D Briggs, Daniel H Cohn, Deborah Krakow

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it, 146 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. The genetic basis of human height.Nature reviews. Genetics · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Involvement of kinesins in skeletal dysplasia: a review.American journal of physiology. Cell physiology · 2024
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Growth plate extracellular matrix defects and short stature in children.Annals of pediatric endocrinology & metabolism · 2022
    Article
  17. Article
  18. Review
  19. Review
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Stuart W TompsonMedical Genetics Institute, Steven Spielberg Building, Cedars-Sinai Medical Center, 8723 Alden Drive, Los Angeles, CA 90048, USA.
Barry Merriman
Vincent A Funari
Maryline Fresquet
Ralph S Lachman
David L Rimoin
Stanley F Nelson
Michael D Briggs
Daniel H Cohn
Deborah Krakow
Cedars-Sinai Medical Center · USUniversity of California, Los Angeles · USWellcome Centre for Cell-Matrix Research · GB

Funding

THE SKELETAL DYSPLASIASP01HD022657 · NICHD · CEDARS-SINAI MEDICAL CENTER · PI EYRE, DAVID R · 1987 to 2011
$17.0M
NICHD NIH HHS HD22657NICHD NIH HHS P01 HD022657Wellcome Trust 071161/Z/03/ZWellcome Trust 084353
6 · The paper itself

Abstract

Analysis of a nuclear family with three affected offspring identified an autosomal-recessive form of spondyloepimetaphyseal dysplasia characterized by severe short stature and a unique constellation of radiographic findings. Homozygosity for a haplotype that was identical by descent between two of the affected individuals identified a locus for the disease gene within a 17.4 Mb interval on chromosome 15, a region containing 296 genes. These genes were assessed and ranked by cartilage selectivity with whole-genome microarray data, revealing only two genes, encoding aggrecan and chondroitin sulfate proteoglycan 4, that were selectively expressed in cartilage. Sequence analysis of aggrecan complementary DNA from an affected individual revealed homozygosity for a missense mutation (c.6799G --> A) that predicts a p.D2267N amino acid substitution in the C-type lectin domain within the G3 domain of aggrecan. The D2267 residue is predicted to coordinate binding of a calcium ion, which influences the conformational binding loops of the C-type lectin domain that mediate interactions with tenascins and other extracellular-matrix proteins. Expression of the normal and mutant G3 domains in mammalian cells showed that the mutation created a functional N-glycosylation site but did not adversely affect protein trafficking and secretion. Surface-plasmon-resonance studies showed that the mutation influenced the binding and kinetics of the interactions between the aggrecan G3 domain and tenascin-C. These findings identify an autosomal-recessive skeletal dysplasia and a significant role for the aggrecan C-type lectin domain in regulating endochondral ossification and, thereby, height.

Indexed as

Genetic Predisposition to DiseaseMutation, MissenseAdolescentAdultAggrecansAmino Acid SequenceAntigensCartilageCell LineChildChondroitin Sulfate Proteoglycan 4FemaleHumansLectins, C-TypeMaleMolecular Sequence DataACAN protein, humanAggrecansAntigensChondroitin Sulfate Proteoglycan 4Lectins, C-TypeProteoglycansTenascin

Identifiers

PMID19110214
PMCPMC2668039
OpenAlexW2068121966

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.