Evidence map›Paper›PMID 19109964›Full record

ArticleInternational journal for parasitology2009

RNA editing and mitochondrial activity in promastigotes and amastigotes of Leishmania donovani.

Martina Nebohácová, Christine E Kim, Larry Simpson, Dmitri A Maslov

Open access · greenAbstract read
In one paragraph

Article in International journal for parasitology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Accurate Identification ofJournal of arthropod-borne diseases · 2022
    Article
  4. Article
  5. Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Genes · 2019
    Article
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Martina NebohácováDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA 90095, USA.
Christine E Kim
Larry Simpson
Dmitri A Maslov
University of California, Los Angeles · USUniversity of California, Riverside · US

Funding

Regulation of RNA Editing in LeishmaniaR03AI070927 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI MASLOV, DMITRI · 2006 to 2007
$145k
NIAID NIH HHS AI070927NIAID NIH HHS R03 AI070927
6 · The paper itself

Abstract

Kinetoplast maxicircle DNA sequence organisation was investigated in Leishmania donovani, strain 1S LdBob. Gene arrangement in the coding (conserved) region of the maxicircle is collinear with that of most trypanosomatids, with individual genes showing 80-90% nucleotide identity to Leishmania tarentolae, strain UC. The notable exception was an integration of a full-size minicircle sequence in the ND1 gene coding region found in L. donovani. Editing patterns of the mitochondrial mRNAs investigated also followed L. tarentolae UC patterns, including productive editing of the components of respiratory complexes III-V, and ribosomal protein S12 (RPS12), as well as the lack of productive editing in five out of six pan-edited cryptogenes (ND3, ND8, ND9, G3, G4) found in these species. Several guide RNAs for the editing events were localised in minicircles and maxicircles in the locations that are conserved between the species. Mitochondrial activity, including rates of oxygen consumption, the presence and the levels of respiratory complexes and their individual subunits and the steady-state levels of several mitochondrial-encoded mRNAs were essentially the same in axenically grown amastigotes and in promastigotes of L. donovani. However, some modulation of mitochondrial activity between these developmental stages was suggested by the finding of an amastigote-specific component in complex IV, a down-regulation of mitochondrial RNA-binding proteins (MRP) and MRP-associated protein (MRP-AP) in amastigotes, and by variations in the levels of RPS12, ND3, ND9, G3 and G4 pre-edited transcripts.

Indexed as

RNA EditingAmino Acid SequenceAnimalsBase SequenceDNA, KinetoplastDNA, ProtozoanElectron TransportElectrophoresis, Gel, Two-DimensionalGene OrderLeishmania donovaniMitochondriaMitochondrial ProteinsMolecular Sequence DataOxygen ConsumptionRNARNA, MessengerDNA, KinetoplastDNA, ProtozoanMitochondrial ProteinsRNARNA, MessengerRNA, Mitochondrial

Identifiers

PMID19109964
PMCPMC2693023
OpenAlexW2145936453

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.