Evidence map›Paper›PMID 19109893›Full record

ArticleCell2008

Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.

Andrea Scrima, Renata Konícková, Bryan K Czyzewski, Yusuke Kawasaki, Philip D Jeffrey, Regina Groisman, Yoshihiro Nakatani, Shigenori Iwai, Nikola P Pavletich, Nicolas H Thomä

Abstract read
In one paragraph

Article in Cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 258 papers.

0numbers the graph read from it
0cells of the map it votes in
258citing papers in PubMed
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

258 citing papers in PubMed, 423 citations in OpenAlex.

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  5. The conformation of the complementary strand and the deformation of the DNA groove upon DDB2 binding justifies the different repair rates for cyclobutane pyrimidine dimers.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2026
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198 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Andrea ScrimaFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH 4058 Basel, Switzerland.
Renata Konícková
Bryan K Czyzewski
Yusuke Kawasaki
Philip D Jeffrey
Regina Groisman
Yoshihiro Nakatani
Shigenori Iwai
Nikola P Pavletich
Nicolas H Thomä
Friedrich Miescher Institute · CHMemorial Sloan Kettering Cancer Center · USThe University of Osaka · JPCentre National de la Recherche Scientifique · FRHarvard University · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Ultraviolet (UV) light-induced pyrimidine photodimers are repaired by the nucleotide excision repair pathway. Photolesions have biophysical parameters closely resembling undamaged DNA, impeding discovery through damage surveillance proteins. The DDB1-DDB2 complex serves in the initial detection of UV lesions in vivo. Here we present the structures of the DDB1-DDB2 complex alone and bound to DNA containing either a 6-4 pyrimidine-pyrimidone photodimer (6-4PP) lesion or an abasic site. The structure shows that the lesion is held exclusively by the WD40 domain of DDB2. A DDB2 hairpin inserts into the minor groove, extrudes the photodimer into a binding pocket, and kinks the duplex by approximately 40 degrees. The tightly localized probing of the photolesions, combined with proofreading in the photodimer pocket, enables DDB2 to detect lesions refractory to detection by other damage surveillance proteins. The structure provides insights into damage recognition in chromatin and suggests a mechanism by which the DDB1-associated CUL4 ubiquitin ligase targets proteins surrounding the site of damage.

Indexed as

DNA RepairUltraviolet RaysAnimalsDNA-Binding ProteinsDNA DamageHumansModels, MolecularPyrimidine DimersXeroderma PigmentosumZebrafishZebrafish ProteinsDDB1 protein, humanDDB2 protein, humanDDB2 protein, zebrafishDNA-Binding ProteinsPyrimidine DimersZebrafish Proteins

Identifiers

PMID19109893
PMCPMC2676164
OpenAlexW1979417055

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.