Evidence map›Paper›PMID 19109425›Full record

ArticleMolecular biology of the cell2009

SPE-39 family proteins interact with the HOPS complex and function in lysosomal delivery.

Guang-dan Zhu, Gloria Salazar, Stephanie A Zlatic, Babar Fiza, Michele M Doucette, Craig J Heilman, Allan I Levey, Victor Faundez, Steven W L'hernault

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.1field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. UtilizingJournal of developmental biology · 2025
    Review
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  11. Article
  12. Review
  13. Article
  14. Membrane Tethering Complexes in the Endosomal System.Frontiers in cell and developmental biology · 2016
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. The regulation of spermatogenesis and sperm function in nematodes.Seminars in cell & developmental biology · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Guang-dan ZhuGraduate Program in Biochemistry, Cell, and Developmental Biology, Departments of *Biology and Cell Biology, and Department of Neurology, Center for Neurodegenerative Disease, Emory University, Atlanta, GA 30322.
Gloria Salazar
Stephanie A Zlatic
Babar Fiza
Michele M Doucette
Craig J Heilman
Allan I Levey
Victor Faundez
Steven W L'hernault
Emory University · US

Funding

Cellular Mechanisms of Neuronal Metal Transport and ToxicityR01GM077569 · NIGMS · EMORY UNIVERSITY · PI FAUNDEZ, VICTOR · 2006 to 2016
$2.6M
Mechanisms of Endosome Trafficking in NeuronsR01NS042599 · NINDS · EMORY UNIVERSITY · PI FAUNDEZ, VICTOR · 2003 to 2012
$2.5M
Secretory Vesicle Function During Spermatogenesis & Fertilization in C. elegansR01GM082932 · NIGMS · EMORY UNIVERSITY · PI L'HERNAULT, STEVEN W. · 2007 to 2010
$1.2M
GENETICS OF CAENORHABDITIS ELEGANS SPERM MORPHOGENESISR01GM040697 · NIGMS · EMORY UNIVERSITY · PI L'HERNAULT, STEVEN W. · 1995 to 2003
$951k
Mechanisms of Endosome Trafficking in NeuronsR56NS042599 · NINDS · EMORY UNIVERSITY · PI FAUNDEZ, VICTOR · 2008 to 2008
$339k
GENETICS OF CAENORHABIDITIS ELEGANS SPERM MORPHOGENESISR29GM040697 · NIGMS · EMORY UNIVERSITY · PI L'HERNAULT, STEVEN W. · 1988 to 1992
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NIGMS NIH HHS GM-077569NIGMS NIH HHS GM-082932NIGMS NIH HHS GM-40697NIGMS NIH HHS R01 GM040697NIGMS NIH HHS R01 GM077569NIGMS NIH HHS R01 GM082932NINDS NIH HHS NS-42599NINDS NIH HHS R01 NS042599NINDS NIH HHS R56 NS042599
6 · The paper itself

Abstract

Yeast and animal homotypic fusion and vacuole protein sorting (HOPS) complexes contain conserved subunits, but HOPS-mediated traffic in animals might require additional proteins. Here, we demonstrate that SPE-39 homologues, which are found only in animals, are present in RAB5-, RAB7-, and RAB11-positive endosomes where they play a conserved role in lysosomal delivery and probably function via their interaction with the core HOPS complex. Although Caenorhabditis elegans spe-39 mutants were initially identified as having abnormal vesicular biogenesis during spermatogenesis, we show that these mutants also have disrupted processing of endocytosed proteins in oocytes and coelomocytes. C. elegans SPE-39 interacts in vitro with both VPS33A and VPS33B, whereas RNA interference of VPS33B causes spe-39-like spermatogenesis defects. The human SPE-39 orthologue C14orf133 also interacts with VPS33 homologues and both coimmunoprecipitates and cosediments with other HOPS subunits. SPE-39 knockdown in cultured human cells altered the morphology of syntaxin 7-, syntaxin 8-, and syntaxin 13-positive endosomes. These effects occurred concomitantly with delayed mannose 6-phosphate receptor-mediated cathepsin D delivery and degradation of internalized epidermal growth factor receptors. Our findings establish that SPE-39 proteins are a previously unrecognized regulator of lysosomal delivery and that C. elegans spermatogenesis is an experimental system useful for identifying conserved regulators of metazoan lysosomal biogenesis.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCarrier ProteinsEndocytosisEndosomesHeLa CellsHumansLysosomesMaleMiceMultiprotein ComplexesProtein BindingProtein Processing, Post-TranslationalProtein TransportReceptor, IGF Type 2Caenorhabditis elegans ProteinsCarrier ProteinsMultiprotein ComplexesReceptor, IGF Type 2RNA, Small InterferingSpe-39 protein, C elegansVesicular Transport ProteinsVIPAS39 protein, humanVPS33A protein, humanVPS33B protein, human

Identifiers

PMID19109425
PMCPMC2642739
OpenAlexW1995012413

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.