Evidence map›Paper›PMID 19109172›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2009

E2A acts in cis in G1 phase of cell cycle to promote Ig gene diversification.

Munehisa Yabuki, Ellen C Ordinario, W Jason Cummings, Monica M Fujii, Nancy Maizels

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Identification of core DNA elements that target somatic hypermutation.Journal of immunology (Baltimore, Md. : 1950) · 2012
    Article
  9. Article
  10. Separation of mutational and transcriptional enhancers in Ig genes.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Temporal regulation of Ig gene diversification revealed by single-cell imaging.Journal of immunology (Baltimore, Md. : 1950) · 2009
    Article
  16. Targeted gene therapies: tools, applications, optimization.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Munehisa YabukiDepartment of Immunology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Ellen C Ordinario
W Jason Cummings
Monica M Fujii
Nancy Maizels
University of Washington · US

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
MECHANISMS OF SOMATIC MUTATION OF IMMUNOGLOBULIN GENESR01GM041712 · NIGMS · YALE UNIVERSITY · PI MAIZELS, NANCY · 1990 to 2011
$3.4M
MOLECULAR MECHANISMS OF ISOTYPE SWITCH RECOMBINATIONR01GM039799 · NIGMS · YALE UNIVERSITY · PI MAIZELS, NANCY · 1988 to 2009
$2.8M
NIA NIH HHS T32 AG000057NIA NIH HHS T32 AG00057NIGMS NIH HHS R01 GM039799NIGMS NIH HHS R01 GM041712NIGMS NIH HHS R01 GM39799NIGMS NIH HHS R01 GM41712NIGMS NIH HHS T32 GM007223NIGMS NIH HHS T32 GM07223
6 · The paper itself

Abstract

Rearranged Ig genes undergo diversification in sequence and structure initiated by the DNA deaminase, activation-induced deaminase. Ig genes must be transcribed for diversification to occur, but whether there are additional requirements for cis activation has not been established. Here we show, by chromatin immunoprecipitation, that the regulatory factor E2A associates with the rearranged Ig lambda(R) gene in the chicken DT40 B cell line, which performs constitutive Ig gene diversification. By analysis of a DT40 derivative in which polymerized lactose operator tags the rearranged lambda(R) gene, we show that E2A must function in cis to promote diversification and that stimulation of diversification in cis depends on the E2A activation domains. By direct imaging, we show that lambda(R)/E2A colocalizations are most prominent in G(1). We further show that expression of the E2A antagonist Id1 prevents lambda(R)/E2A colocalizations in G(1) and impairs diversification but not transcription of lambda(R). Thus, E2A acts in cis to promote Ig gene diversification, and G(1) phase is the critical window for E2A action.

Indexed as

Gene Rearrangement, B-Lymphocyte, Light ChainGenes, ImmunoglobulinAnimalsAntibody DiversityBasic Helix-Loop-Helix ProteinsB-LymphocytesCell Line, TumorChickensE-Box ElementsG1 PhaseImmunoglobulin lambda-ChainsInhibitor of Differentiation ProteinsIsopropyl ThiogalactosideTCF Transcription FactorsTranscription Factor 7-Like 1 ProteinBasic Helix-Loop-Helix ProteinsImmunoglobulin lambda-ChainsInhibitor of Differentiation Proteinsisopropyl-beta-galactopyranosideIsopropyl ThiogalactosideTCF Transcription FactorsTranscription Factor 7-Like 1 Protein

Identifiers

PMID19109172
PMCPMC2637363
OpenAlexW2136395657

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.