Evidence map›Paper›PMID 19109146›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2009

TCR mu recombination and transcription relative to the conventional TCR during postnatal development in opossums.

Zuly E Parra, Michelle L Baker, April M Lopez, Jonathan Trujillo, Joseph M Volpe, Robert D Miller

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  5. TR Locus Annotation and Characteristics ofFrontiers in immunology · 2021
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  11. Genome complexity in the coelacanth is reflected in its adaptive immune system.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Zuly E ParraCenter for Evolutionary & Theoretical Immunology and Department of Biology, The University of New Mexico, Albuquerque, NM 87131, USA.
Michelle L Baker
April M Lopez
Jonathan Trujillo
Joseph M Volpe
Robert D Miller
University of New Mexico · USDuke University · US

Funding

UNM COBRE: THEORETICAL STUDY OF SPECIFICITY OF RNA SILENCING MECHANISMP20RR018754 · NCRR · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2003 to 2011
$16.7M
NCRR NIH HHS P20 RR018754
6 · The paper itself

Abstract

Marsupials are a distinct lineage of mammals notable for giving birth to highly altricial (relatively less developed) young. The recent discovery of a unique TCR chain in marsupials, TCRmu, raises questions about its possible role in early development. Here we compare the timing of V(D)J recombination and appearance of TCRmu transcripts relative to the conventional TCRalpha, beta, gamma, and delta mRNA during postnatal development in the opossum. There are two TCRmu transcript isoforms, TCRmu1.0 and TCRmu2.0. TCRmu1.0, which uses prejoined V(D)J segments, is detectable as early as day 1, when the thymus is primarily undifferentiated epithelium. The other isoform, TCRmu2.0, which requires V(D)J recombination and contains an unusual double V configuration, is not detectable until day 13 when the thymus is histologically mature. Surprisingly, we were able to detect TCRalpha, beta, and delta mRNA transcribed from loci that had completed V(D)J recombination as early as day 1 as well. At this early age there is apparent evidence for preference in the V segments used in the TCRalpha and beta genes. In the case of Valpha this preference appears to be associated with position in the TCRalpha/delta locus. In Vbeta, however, preference may be due to the use of microhomology in the V, D, and J segments. Mature TCRgamma transcripts were not detected until day 8, suggesting that, in contrast to eutherian mammals, in the opossum alphabeta T cell development precedes gammadelta T cell development. The results support that there may be differences in T cell subset development between marsupials and placental mammals.

Indexed as

Recombination, GeneticTranscription, GeneticAnimalsAnimals, NewbornBase SequenceFemaleGene Rearrangement, alpha-Chain T-Cell Antigen ReceptorGene Rearrangement, beta-Chain T-Cell Antigen ReceptorGene Rearrangement, delta-Chain T-Cell Antigen ReceptorGene Rearrangement, gamma-Chain T-Cell Antigen ReceptorMaleMolecular Sequence DataMonodelphisProtein IsoformsReceptors, Antigen, T-CellThymus GlandProtein IsoformsReceptors, Antigen, T-Cell

Identifiers

PMID19109146
PMCPMC2921273
OpenAlexW1611248254

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.