Evidence map›Paper›PMID 19107414›Full record

ReviewMethods in molecular biology (Clifton, N.J.)2009

Identification of SUMO-binding motifs by NMR.

Candace S Seu, Yuan Chen

Abstract readReview
In one paragraph

Review in Methods in molecular biology (Clifton, N.J.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Candace S SeuDepartment of Chemistry and Biochemistry, University of California, San Diego, CA, USA.
Yuan Chen

Funding

SUMO modification and DNA damage response in cancer therapyR01GM086171 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHEN, YUAN · 2008 to 2020
$5.2M
NMR Studies of Ku70 and Ku80 DomainsR01CA094595 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI CHEN, YUAN · 2001 to 2005
$1.7M
The Enzymatic Pathway of a Ubiquitin-Like ModificationR01GM074748 · NIGMS · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI CHEN, YUAN · 2007 to 2010
$1.5M
NCI NIH HHS CA94595NCI NIH HHS R01 CA094595NIGMS NIH HHS GM074748NIGMS NIH HHS R01 GM074748NIGMS NIH HHS R01 GM086171
6 · The paper itself

Abstract

Post-translational modification by the small ubiquitin-like modifier (SUMO) family of proteins is an important cellular regulatory mechanism, and in recent years has been found to be involved in a large and diverse set of signaling pathways. Most of these SUMO-dependent functions appear to be mediated by the interaction between SUMO attached to the modified proteins and a "SUMO-binding motif" (SBM or SIM) on receptor proteins. Nuclear magnetic resonance (NMR) studies were instrumental in the identification of this SUMO-binding motif, and reveal that, depending on the sequence context, this motif can bind to SUMO in two opposing orientations. In this paper, we provide an overview of how NMR methods can be used to identify such short conserved binding motifs and structurally characterize their interaction with target proteins. These experiments are complementary to traditional biochemical methods and are applicable to the identification of other SUMO-binding motifs and to the studies of other ubiquitin-like modification systems.

Indexed as

Amino Acid MotifsAnimalsBinding SitesHumansModels, BiologicalModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Processing, Post-TranslationalProteinsSUMO-1 ProteinProteinsSUMO-1 Protein

Identifiers

PMID19107414
PMCPMC2862286

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.