Evidence map›Paper›PMID 19107147›Full record

ArticleEuropean journal of human genetics : EJHG2009

Profound, prelingual nonsyndromic deafness maps to chromosome 10q21 and is caused by a novel missense mutation in the Usher syndrome type IF gene PCDH15.

Lance Doucette, Nancy D Merner, Sandra Cooke, Elizabeth Ives, Dante Galutira, Vanessa Walsh, Tom Walsh, Linda MacLaren, Tracey Cater, Bridget Fernandez and 9 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Nanomechanics of wild-type and mutant dimers of the inner-ear tip-link protein protocadherin 15.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Usher Syndrome: Genetics of a Human Ciliopathy.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. Inframe deletion of humanJournal of medical genetics · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
    Shotland, Larry [corrected to Shotland, Lawrence I]; Li, X C [corrected to Li, Xiaoyan Cindy]
5 · Who and what money

Authors and funding

19 authors at 7 institutions in 2 countries.

Lance DoucetteDiscipline of Genetics, Faculty of Medicine, Memorial University of Newfoundland, St John's, Newfoundland and Labrador, Canada.
Nancy D Merner
Sandra Cooke
Elizabeth Ives
Dante Galutira
Vanessa Walsh
Tom Walsh
Linda MacLaren
Tracey Cater
Bridget Fernandez
Jane S Green
Edward R Wilcox
Lawrence I Shotland
Larry Shotland
Xiaoyan Cindy Li
X C Li
Ming Lee
Mary-Claire King
Terry-Lynn Young
Memorial University of Newfoundland · CASeattle University · USNational Institute on Deafness and Other Communication Disorders · USAlberta Children's Hospital · CAJaneway Children's Health and Rehabilitation Centre · CANational Institutes of Health · USUniversity of Washington · US

Funding

MAPPING A GENE FOR DEAFNESS IN A LARGE KINDREDR01DC001076 · NIDCD · UNIVERSITY OF WASHINGTON · PI KING, MARY-CLAIRE · 1991 to 2001
$713k
NIDCD NIH HHS R01DC01076
6 · The paper itself

Abstract

We studied a consanguineous family (Family A) from the island of Newfoundland with an autosomal recessive form of prelingual, profound, nonsyndromic sensorineural hearing loss. A genome-wide scan mapped the deafness trait to 10q21-22 (max LOD score of 4.0; D10S196) and fine mapping revealed a 16 Mb ancestral haplotype in deaf relatives. The PCDH15 gene was mapped within the critical region and was an interesting candidate because truncating mutations cause Usher syndrome type IF (USH1F) and two missense mutations have been previously associated with isolated deafness (DFNB23). Sequencing of the PCDH15 gene revealed 33 sequencing variants. Three of these variants were homozygous exclusively in deaf siblings but only one of them was not seen in ethnically matched controls. This novel c.1583 T>A transversion predicts an amino-acid substitution of a valine with an aspartic acid at codon 528 (V528D). Like the two DFNB23 mutations, the V528D mutation in Family A occurs in a highly conserved extracellular cadherin (EC) domain of PCDH15 and is predicted to be more deleterious than the previously identified DFNB23 missense mutations (R134G and G262D). Physical assessment, vestibular and visual function testing in deaf adults ruled out syndromic deafness because of Usher syndrome. This study validates the DFNB23 designation and supports the hypothesis that missense mutations in conserved motifs of PCDH15 cause nonsyndromic hearing loss. This emerging genotype-phenotype correlation in USH1F is similar to that in several other USH1 genes and cautions against a prognosis of a dual sensory loss in deaf children found to be homozygous for hypomorphic mutations at the USH1F locus.

Indexed as

Mutation, MissenseAudiometry, Pure-ToneBase SequenceCadherin Related ProteinsCadherinsChromosome MappingChromosomes, Human, Pair 10ConsanguinityDeafnessDNA Mutational AnalysisFamily HealthFemaleGene FrequencyGenotypeGeographyHumansCadherin Related ProteinsCadherinsCDHR15, human

Identifiers

PMID19107147
PMCPMC2986256
OpenAlexW2071293164

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.