Evidence map›Paper›PMID 19105186›Full record

ArticleHuman mutation2009

Identification of novel mutations and sequence variation in the Zellweger syndrome spectrum of peroxisome biogenesis disorders.

Wing Yan Yik, Steven J Steinberg, Ann B Moser, Hugo W Moser, Joseph G Hacia

Open access · bronzeAbstract read
In one paragraph

Article in Human mutation, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
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  10. Exposure to SARS-CoV-2 and Infantile Diseases.Global medical genetics · 2023
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  11. Article
  12. A subcellular cookie cutter for spatial genomics in human tissue.Analytical and bioanalytical chemistry · 2022
    Article
  13. Article
  14. AAV-mediatedMolecular therapy. Methods & clinical development · 2021
    Article
  15. A founder mutation in PEX12 among Egyptian patients in peroxisomal biogenesis disorder.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2021
    Article
  16. Translational pediatrics · 2021
    Article
  17. Article
  18. Article
  19. The Nitric Oxide Donor,Frontiers in cell and developmental biology · 2021
    Article
  20. The peroxisomal disorder spectrum and Heimler syndrome: Deep phenotyping and review of the literature.American journal of medical genetics. Part C, Seminars in medical genetics · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Wing Yan YikDepartment of Biochemistry and Molecular Biology, University of Southern California, Los Angeles, California, USA.
Steven J Steinberg
Ann B Moser
Hugo W Moser
Joseph G Hacia
Kennedy Krieger Institute · USUniversity of Southern California · USJohns Hopkins University · US

Funding

Comparative Genomics of Peroxisomal Lipid MetabolismR01GM072477 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HACIA, JOSEPH G · 2005 to 2009
$1.8M
Mutational Analysis of Peroxisome Biogenesis DisordersR21HD050277 · NICHD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HACIA, JOSEPH G · 2005 to 2006
$400k
EXTRAMURAL RESEARCH FACILITIES CONTRUCTION PROJECTC06CA062528 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KEDES, LAURENCE H · 1993 to 1994
–
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR010600 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KEDES, LAURENCE H · 1994 to 1994
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RESEARCH FACILITIES IMPROVEMENT PROGRAM AND REMODELINGC06RR014514 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KEDES, LAURENCE H · 1999 to 1999
–
NCI NIH HHS C06 CA062528NCI NIH HHS C06 CA62528-01NCRR NIH HHS C06 RR014514NCRR NIH HHS C06 RR10600-01NCRR NIH HHS C06 RR14514-01NICHD NIH HHS R21 HD050277NIGMS NIH HHS R01 GM072477
6 · The paper itself

Abstract

Peroxisome biogenesis disorders (PBD) are a heterogeneous group of autosomal recessive neurodegenerative disorders that affect multiple organ systems. Approximately 80% of PBD patients are classified in the Zellweger syndrome spectrum (PBD-ZSS). Mutations in the PEX1, PEX6, PEX10, PEX12, or PEX26 genes are found in approximately 90% of PBD-ZSS patients. Here, we sequenced the coding regions and splice junctions of these five genes in 58 PBD-ZSS cases previously subjected to targeted sequencing of a limited number of PEX gene exons. In our cohort, 71 unique sequence variants were identified, including 18 novel mutations predicted to disrupt protein function and 2 novel silent variants. We identified 4 patients who had two deleterious mutations in one PEX gene and a third deleterious mutation in a second PEX gene. For two such patients, we conducted cell fusion complementation analyses to identify the defective gene responsible for aberrant peroxisome assembly. Overall, we provide empirical data to estimate the relative fraction of disease-causing alleles that occur in the coding and splice junction sequences of these five PEX genes and the frequency of cases where mutations occur in multiple PEX genes. This information is beneficial for efforts aimed at establishing rapid and sensitive clinical diagnostics for PBD-ZSS patients and interpreting the results from these genetic tests.

Indexed as

MutationAdenosine TriphosphatasesAllelesATPases Associated with Diverse Cellular ActivitiesCell FusionCohort StudiesDNA Mutational AnalysisFibroblastsGene FrequencyGenetic Complementation TestGenetic Predisposition to DiseaseGenotypeHumansMembrane ProteinsPeroxinsPeroxisomal DisordersAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesMembrane ProteinsPeroxinsPEX10 protein, humanPEX12 protein, humanPEX1 protein, humanPEX26 protein, humanPEX6 protein, humanReceptors, Cytoplasmic and Nuclear

Identifiers

PMID19105186
PMCPMC2649967
OpenAlexW2029328769

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.