Evidence map›Paper›PMID 19105172›Full record

ArticleProteomics2009

A comprehensive analysis of Trypanosoma brucei mitochondrial proteome.

Aswini K Panigrahi, Yuko Ogata, Alena Zíková, Atashi Anupama, Rachel A Dalley, Nathalie Acestor, Peter J Myler, Kenneth D Stuart

Abstract read
In one paragraph

Article in Proteomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
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  10. Article
  11. GTPase Era at the heart of ribosome assembly.Frontiers in molecular biosciences · 2023
    Review
  12. Article
  13. Review
  14. Frontiers in molecular biosciences · 2022
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Aswini K PanigrahiSeattle Biomedical Research Institute, Seattle, WA 98109, USA.
Yuko Ogata
Alena Zíková
Atashi Anupama
Rachel A Dalley
Nathalie Acestor
Peter J Myler
Kenneth D Stuart

Funding

T. brucei Mitochondrial ProteomeR01AI065935 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 2005 to 2009
$3.9M
NIAID NIH HHS AI065935NIAID NIH HHS R01 AI065935
6 · The paper itself

Abstract

The composition of the large, single, mitochondrion (mt) of Trypanosoma brucei was characterized by MS (2-D LC-MS/MS and gel-LC-MS/MS) analyses. A total of 2897 proteins representing a substantial proportion of procyclic form cellular proteome were identified, which confirmed the validity of the vast majority of gene predictions. The data also showed that the genes annotated as hypothetical (species specific) were overpredicted and that virtually all genes annotated as hypothetical, unlikely are not expressed. By comparing the MS data with genome sequence, 40 genes were identified that were not previously predicted. The data are placed in a publicly available web-based database (www.TrypsProteome.org). The total mitochondrial proteome is estimated at 1008 proteins, with 401, 196, and 283 assigned to the mt with high, moderate, and lower confidence, respectively. The remaining mitochondrial proteins were estimated by statistical methods although individual assignments could not be made. The identified proteins have predicted roles in macromolecular, metabolic, energy generating, and transport processes providing a comprehensive profile of the protein content and function of the T. brucei mt.

Indexed as

AnimalsCell FractionationDatabases, ProteinInternetMitochondrial ProteinsModels, BiologicalProteomicsProtozoan ProteinsReproducibility of ResultsSequence Analysis, ProteinTandem Mass SpectrometryTrypanosoma brucei bruceiMitochondrial ProteinsProtozoan Proteins

Identifiers

PMID19105172
PMCPMC2869593

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.