ArticleMolecular genetics and genomics : MGG2009
Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences.
Article in Molecular genetics and genomics : MGG, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 53 citations in OpenAlex.
- Genetics, genomics and breeding of fennel.BMC plant biology · 2025Review
- Impact of Genomic and Transcriptomic Resources on Apiaceae Crop Breeding Strategies.International journal of molecular sciences · 2021Review
- Using carrot centromeric repeats to study karyotype relationships in the genus Daucus (Apiaceae).BMC genomics · 2021Article
- New insights into domestication of carrot from root transcriptome analyses.BMC genomics · 2014Article
- Article
- Diversity, genetic mapping, and signatures of domestication in the carrot (Molecular breeding : new strategies in plant improvement · 2014Article
- Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.Frontiers in plant science · 2014Article
- Characterization of centromeric histone H3 (CENH3) variants in cultivated and wild carrots (Daucus sp.).PloS one · 2014Article
- A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens.BMC genomics · 2013Article
- Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis.Plant molecular biology · 2013Article
- BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.Plant molecular biology · 2013Article
- First insights into the large genome of Epimedium sagittatum (Sieb. et Zucc) Maxim, a Chinese Ttaditional medicinal plant.International journal of molecular sciences · 2013Article
- Article
- Transcriptome analysis of Thapsia laciniata Rouy provides insights into terpenoid biosynthesis and diversity in Apiaceae.International journal of molecular sciences · 2013Article
- Molecular mapping of vernalization requirement and fertility restoration genes in carrot.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity.BMC genomics · 2011Article
- Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.BMC genomics · 2011Article
- Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome.BMC genomics · 2011Article
- Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome.BMC genomics · 2011Article
- Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing.BMC genomics · 2011Article
Corrections and comments
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Authors and funding
7 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Carrot is the most economically important member of the Apiaceae family and a major source of provitamin A carotenoids in the human diet. However, carrot molecular resources are relatively underdeveloped, hampering a number of genetic studies. Here, we report on the synthesis and characterization of a bacterial artificial chromosome (BAC) library of carrot. The library is 17.3-fold redundant and consists of 92,160 clones with an average insert size of 121 kb. To provide an overview of the composition and organization of the carrot nuclear genome we generated and analyzed 2,696 BAC-end sequences (BES) from nearly 2,000 BACs, totaling 1.74 Mb of BES. This analysis revealed that 14% of the BES consists of known repetitive elements, with transposable elements representing more than 80% of this fraction. Eleven novel carrot repetitive elements were identified, covering 8.5% of the BES. Analysis of microsatellites showed a comparably low frequency for these elements in the carrot BES. Comparisons of the translated BES with protein databases indicated that approximately 10% of the carrot genome represents coding sequences. Moreover, among eight dicot species used for comparison purposes, carrot BES had highest homology to protein-coding sequences from tomato. This deep-coverage library will aid carrot breeding and genetics.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.