Evidence map›Paper›PMID 19103740›Full record

ArticleMolecular and cellular biology2009

Raf kinase inhibitory protein function is regulated via a flexible pocket and novel phosphorylation-dependent mechanism.

Alexey E Granovsky, Matthew C Clark, Dan McElheny, Gary Heil, Jia Hong, Xuedong Liu, Youngchang Kim, Grazyna Joachimiak, Andrzej Joachimiak, Shohei Koide and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 53 citations in OpenAlex.

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  8. Sphingosine kinases regulate ER contacts with late endocytic organelles and cholesterol trafficking.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
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  20. Conserved salt-bridge competition triggered by phosphorylation regulates the protein interactome.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Alexey E GranovskyBen May Department for Cancer Research, University of Chicago, Chicago, IL 60637, USA.
Matthew C Clark
Dan McElheny
Gary Heil
Jia Hong
Xuedong Liu
Youngchang Kim
Grazyna Joachimiak
Andrzej Joachimiak
Shohei Koide
Marsha Rich Rosner
May Institute · USArgonne National Laboratory · USUniversity of Chicago · USUniversity of Colorado Boulder · US

Funding

Signaling Pathways in Neuronal CellsR01NS033858 · NINDS · UNIVERSITY OF CHICAGO · PI ROSNER, MARSHA R · 1995 to 2007
$2.8M
Role of Raf Kinase Inhibitory Protein in Prostate CancerR01CA112310 · NCI · UNIVERSITY OF CHICAGO · PI ROSNER, MARSHA R · 2005 to 2009
$1.5M
Howard Hughes Medical InstituteNCI NIH HHS CA112310NCI NIH HHS R01 CA112310NINDS NIH HHS NS33858NINDS NIH HHS R01 NS033858
6 · The paper itself

Abstract

Raf kinase inhibitory protein (RKIP/PEBP1), a member of the phosphatidylethanolamine binding protein family that possesses a conserved ligand-binding pocket, negatively regulates the mammalian mitogen-activated protein kinase (MAPK) signaling cascade. Mutation of a conserved site (P74L) within the pocket leads to a loss or switch in the function of yeast or plant RKIP homologues. However, the mechanism by which the pocket influences RKIP function is unknown. Here we show that the pocket integrates two regulatory signals, phosphorylation and ligand binding, to control RKIP inhibition of Raf-1. RKIP association with Raf-1 is prevented by RKIP phosphorylation at S153. The P74L mutation increases kinase interaction and RKIP phosphorylation, enhancing Raf-1/MAPK signaling. Conversely, ligand binding to the RKIP pocket inhibits kinase interaction and RKIP phosphorylation by a noncompetitive mechanism. Additionally, ligand binding blocks RKIP association with Raf-1. Nuclear magnetic resonance studies reveal that the pocket is highly dynamic, rationalizing its capacity to interact with distinct partners and be involved in allosteric regulation. Our results show that RKIP uses a flexible pocket to integrate ligand binding- and phosphorylation-dependent interactions and to modulate the MAPK signaling pathway. This mechanism is an example of an emerging theme involving the regulation of signaling proteins and their interaction with effectors at the level of protein dynamics.

Indexed as

Allosteric RegulationBinding SitesHumansMagnetic Resonance SpectroscopyMAP Kinase Signaling SystemPhosphatidylethanolamine Binding ProteinPhosphorylationraf KinasesPEBP1 protein, humanPhosphatidylethanolamine Binding Proteinraf Kinases

Identifiers

PMID19103740
PMCPMC2643833
OpenAlexW2107108391

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.